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    MAGI1-AS1 MAGI1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100873983, updated on 17-Sep-2024

    Summary

    Official Symbol
    MAGI1-AS1provided by HGNC
    Official Full Name
    MAGI1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40091
    See related
    Ensembl:ENSG00000240175 AllianceGenome:HGNC:40091
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See MAGI1-AS1 in Genome Data Viewer
    Location:
    3p14.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (65893816..65925297)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (65937859..65969306)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (65879491..65910972)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene membrane associated guanylate kinase, WW and PDZ domain containing 1 Neighboring gene uncharacterized LOC107986018 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr3:65747629-65748266 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:65776724-65776896 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:65854323-65854824 Neighboring gene ribosomal protein L17 pseudogene 17 Neighboring gene MAGI1 intronic transcript 1 Neighboring gene Sharpr-MPRA regulatory region 7664 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:65887567-65888467 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:65888468-65889367 Neighboring gene Sharpr-MPRA regulatory region 14829 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:65949459-65950658 Neighboring gene uncharacterized LOC124900543 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:65985258-65985772 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:65985773-65986287 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:65995041-65995541 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:65996456-65997048 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:66021123-66021952 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:66021953-66022780 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:66022781-66023608 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14503 Neighboring gene uncharacterized LOC105377128

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046575.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX089101
      Related
      ENST00000472514.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      65893816..65925297
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      65937859..65969306
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)