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    LOC349160 uncharacterized LOC349160 [ Homo sapiens (human) ]

    Gene ID: 349160, updated on 17-Sep-2024

    Summary

    Gene symbol
    LOC349160
    Gene description
    uncharacterized LOC349160
    See related
    Ensembl:ENSG00000234352
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LOC349160 in Genome Data Viewer
    Location:
    7q33
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (136898773..137164341, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (138208472..138473848, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (136583520..136849088, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375524 Neighboring gene MPRA-validated peak6766 silencer Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr7:136464707-136465229 Neighboring gene small nucleolar RNA U13 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:136554078-136554840 Neighboring gene cholinergic receptor muscarinic 2 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_97737 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_97763 Neighboring gene microRNA 490 Neighboring gene keratin 8 pseudogene 51 Neighboring gene MPRA-validated peak6770 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr7:136765721-136765913 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:136778098-136778598 Neighboring gene MPRA-validated peak6771 silencer Neighboring gene MPRA-validated peak6772 silencer Neighboring gene MPRA-validated peak6775 silencer Neighboring gene MPRA-validated peak6776 silencer Neighboring gene uncharacterized LOC105375525 Neighboring gene ribosomal protein L18 pseudogene 5 Neighboring gene NANOG hESC enhancer GRCh37_chr7:136926348-136926849 Neighboring gene HERV.E-PTN promoter Neighboring gene small nucleolar RNA SNORD81 Neighboring gene pleiotrophin

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide meta-analysis identifies new susceptibility loci for migraine.
    EBI GWAS Catalog
    Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046103.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC009264, AK097470
      Related
      ENST00000425981.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      136898773..137164341 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      138208472..138473848 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)