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GOLGA6L4 golgin A6 family like 4 [ Homo sapiens (human) ]

Gene ID: 643707, updated on 10-Oct-2024

Summary

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Official Symbol
GOLGA6L4provided by HGNC
Official Full Name
golgin A6 family like 4provided by HGNC
Primary source
HGNC:HGNC:27256
See related
Ensembl:ENSG00000184206 AllianceGenome:HGNC:27256
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 12.0), ovary (RPKM 8.0) and 25 other tissues See more
Orthologs
all
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Genomic context

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See GOLGA6L4 in Genome Data Viewer
Location:
15q25.2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (84235773..84245358)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (82101693..82112434)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (84904525..84914110)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene chondroitin sulfate proteoglycan 4 pseudogene Neighboring gene GOLGA2 pseudogene 7 Neighboring gene RNA, 7SL, cytoplasmic 331, pseudogene Neighboring gene uncharacterized LOC105376724 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:84898701-84899200 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9981 Neighboring gene UBE2Q2 pseudogene 8 Neighboring gene uncharacterized LOC105370936

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Analysis of the DNA sequence and duplication history of human chromosome 15. Zody MC, et al. Nature, 2006 Mar 30. PMID 16572171
  2. Biological insights from 108 schizophrenia-associated genetic loci. Schizophrenia Working Group of the Psychiatric Genomics Consortium. Nature, 2014 Jul 24. PMID 25056061, Free PMC Article
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Biological insights from 108 schizophrenia-associated genetic loci.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Homology

Clone Names

  • FLJ33459

General protein information

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Preferred Names
golgin subfamily A member 6-like protein 4
Names
golgi autoantigen, golgin subfamily a, 6-like 4
putative golgin subfamily A member 6-like protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001267536.3 → NP_001254465.2  golgin subfamily A member 6-like protein 4

    See identical proteins and their annotated locations for NP_001254465.2

    Status: VALIDATED

    Source sequence(s)
    AC136698
    Consensus CDS
    CCDS73774.1
    UniProtKB/Swiss-Prot
    A6NEF3, D6REZ9, H0YKK7
    Related
    ENSP00000421586.2, ENST00000510439.7
    Conserved Domains (1) summary
    pfam15070
    Location:83 → 198
    GOLGA2L5; Putative golgin subfamily A member 2-like protein 5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    84235773..84245358
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017022482.2 → XP_016877971.1  golgin subfamily A member 6-like protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A0J9YW09

  2. XM_017022481.2 → XP_016877970.1  golgin subfamily A member 6-like protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A0J9YW09

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791797.1 Reference GRCh38.p14 PATCHES

    Range
    841561..851224
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054333168.1 → XP_054189143.1  golgin subfamily A member 6-like protein 4 isoform X3

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187606.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    129001..138515 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    82101693..82112434
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054378608.1 → XP_054234583.1  golgin subfamily A member 6-like protein 4 isoform X3

  2. XM_054378610.1 → XP_054234585.1  golgin subfamily A member 6-like protein 4 isoform X2

  3. XM_054378611.1 → XP_054234586.1  golgin subfamily A member 6-like protein 4 isoform X5

  4. XM_054378609.1 → XP_054234584.1  golgin subfamily A member 6-like protein 4 isoform X4

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_006151.4: Suppressed sequence

    Description
    NG_006151.4: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A6NEF3.3 GenPept UniProtKB/Swiss-Prot:A6NEF3

Gene LinkOut

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Molecular Biology Databases
Research Materials