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GOLGA6L9 golgin A6 family like 9 [ Homo sapiens (human) ]

Gene ID: 440295, updated on 17-Sep-2024

Summary

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Official Symbol
GOLGA6L9provided by HGNC
Official Full Name
golgin A6 family like 9provided by HGNC
Primary source
HGNC:HGNC:37229
See related
Ensembl:ENSG00000197978 AllianceGenome:HGNC:37229
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GOLGA6L20
Expression
Broad expression in testis (RPKM 10.2), skin (RPKM 7.1) and 25 other tissues See more
Orthologs
all
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Genomic context

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See GOLGA6L9 in Genome Data Viewer
Location:
15q25.2
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (82415923..82439153)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (80293944..80303281)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (82722021..82731353)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene golgin A6 family like 10 Neighboring gene NANOG hESC enhancer GRCh37_chr15:82798244-82798745 Neighboring gene UBE2Q2 pseudogene 2 Neighboring gene ribosomal protein L9 pseudogene 8 Neighboring gene H3K4me1 hESC enhancers GRCh37_chr15:83109001-83109502 and GRCh37_chr15:83006785-83007776 Neighboring gene uncharacterized LOC102724034 Neighboring gene dynamin 1 pseudogene 36

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A proteome-scale map of the SARS-CoV-2-human contactome. Kim DK, et al. Nat Biotechnol, 2023 Jan. PMID 36217029, Free PMC Article
  2. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074
  3. A reference map of the human binary protein interactome. Luck K, et al. Nature, 2020 Apr. PMID 32296183, Free PMC Article
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • DKFZp686C168

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
golgin subfamily A member 6-like protein 9
Names
golgi autoantigen, golgin subfamily a, 6-like 9
golgin A6 family-like 20
putative golgin subfamily A member 6-like protein 20

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001291420.2 → NP_001278349.1  golgin subfamily A member 6-like protein 9 isoform 2

    See identical proteins and their annotated locations for NP_001278349.1

    Status: VALIDATED

    Source sequence(s)
    AC243919
    UniProtKB/Swiss-Prot
    A6NEM1
    Conserved Domains (1) summary
    pfam15070
    Location:2 → 40
    GOLGA2L5; Putative golgin subfamily A member 2-like protein 5

  2. NM_198181.4 → NP_937824.3  golgin subfamily A member 6-like protein 9 isoform 1

    See identical proteins and their annotated locations for NP_937824.3

    Status: VALIDATED

    Source sequence(s)
    AC243919
    Consensus CDS
    CCDS45326.1
    UniProtKB/Swiss-Prot
    A0A087WXJ1, A6NEM1, A6NFL8, H0YK89, Q8IVV3
    UniProtKB/TrEMBL
    A0A087X1J3
    Related
    ENSP00000481078.1, ENST00000618348.2
    Conserved Domains (1) summary
    pfam15070
    Location:83 → 222
    GOLGA2L5; Putative golgin subfamily A member 2-like protein 5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    82415923..82439153
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047432539.1 → XP_047288495.1  golgin subfamily A member 6-like protein 9 isoform X2

  2. XM_017022226.2 → XP_016877715.1  golgin subfamily A member 6-like protein 9 isoform X3

    UniProtKB/TrEMBL
    H0YA86

  3. XM_011521601.3 → XP_011519903.1  golgin subfamily A member 6-like protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A087X1J3
    Conserved Domains (1) summary
    pfam15070
    Location:75 → 178
    GOLGA2L5; Putative golgin subfamily A member 2-like protein 5

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187606.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    218901..228233
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    80293944..80303281
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A6NEM1.4 GenPept UniProtKB/Swiss-Prot:A6NEM1

Gene LinkOut

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