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CPB2-AS1 CPB2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100509894, updated on 22-Oct-2024

Summary

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Official Symbol
CPB2-AS1provided by HGNC
Official Full Name
CPB2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:39898
See related
Ensembl:ENSG00000235903 AllianceGenome:HGNC:39898
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in brain (RPKM 1.2), liver (RPKM 0.2) and 3 other tissues See more
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Genomic context

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See CPB2-AS1 in Genome Data Viewer
Location:
13q14.13
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (46052848..46101347)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (45274238..45322725)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (46626983..46675482)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370191 Neighboring gene zinc finger CCCH-type containing 13 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:46626065-46626601 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:46626602-46627137 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7686 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7687 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7688 Neighboring gene carboxypeptidase B2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:46660879-46661378 Neighboring gene Sharpr-MPRA regulatory region 4806 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7689 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7690 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:46724131-46725330 Neighboring gene lymphocyte cytosolic protein 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7691 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7692 Neighboring gene RNA, 7SL, cytoplasmic 288, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7693 Neighboring gene uncharacterized LOC107984578 Neighboring gene uncharacterized LOC105370192

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • CPB2 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046226.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK124928, AL137141
    Related
    ENST00000606243.7

  2. NR_046227.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon in the 3' region, compared to variant 1.
    Source sequence(s)
    AK095119, AL137141
    Related
    ENST00000606991.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    46052848..46101347
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    45274238..45322725
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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