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    BTF3P11 basic transcription factor 3 pseudogene 11 [ Homo sapiens (human) ]

    Gene ID: 690, updated on 17-Sep-2024

    Summary

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    Official Symbol
    BTF3P11provided by HGNC
    Official Full Name
    basic transcription factor 3 pseudogene 11provided by HGNC
    Primary source
    HGNC:HGNC:1126
    See related
    MIM:602543; AllianceGenome:HGNC:1126
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    OPG; OCIF; BRF3L1; BTF3L1; HUMBTFB; TNFRSF11B
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    Genomic context

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    See BTF3P11 in Genome Data Viewer
    Location:
    13q22.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (76928451..76929090)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (76152120..76152759)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (77502585..77503224)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984587 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:77459555-77460054 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5411 Neighboring gene potassium channel tetramerization domain containing 12 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr13:77491455-77492654 Neighboring gene uncharacterized LOC105370269 Neighboring gene aconitate decarboxylase 1 Neighboring gene ribosomal protein L7 pseudogene 44

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The visual assignment of genes by fiber-fish: BTF3 protein homologue gene (BTF3) and a novel pseudogene of human RNA helicase A (DDX9P) on 13q22. Klockars T, et al. Genomics, 1997 Sep 15. PMID 9325059
    2. Genomic structure of the putative BTF3 transcription factor. Kanno M, et al. Gene, 1992 Aug 15. PMID 1386332
    3. Salt-inducible kinase 3, SIK3, is a new gene associated with hearing. Wolber LE, et al. Hum Mol Genet, 2014 Dec 1. PMID 25060954, Free PMC Article
    4. Multiple genetic loci for bone mineral density and fractures. Styrkarsdottir U, et al. N Engl J Med, 2008 May 29. PMID 18445777
    5. Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette's syndrome and OCD. Yu D, et al. Am J Psychiatry, 2015 Jan. PMID 25158072, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Cross-Disorder Genome-Wide Analyses Suggest a Complex Genetic Relationship Between Tourette's Syndrome and OCD.
    EBI GWAS Catalog
    Multiple genetic loci for bone mineral density and fractures.
    EBI GWAS Catalog
    Salt-inducible kinase 3, SIK3, is a new gene associated with hearing.
    EBI GWAS Catalog

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • BTF3 homologue
    • basic transcription factor 3, like 1
    • basic transcription factor 3-like 1, pseudogene
    • lambda h27A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026983.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AC000403

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      76928451..76929090
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      76152120..76152759
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_004671.3: Suppressed sequence

      Description
      NG_004671.3: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.

    2. NM_001208.1: Suppressed sequence

      Description
      NM_001208.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
    Nucleotide Protein
    Heading Accession and Version

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