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    HSD17B2-AS1 HSD17B2 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 105371363, updated on 28-Oct-2024

    Summary

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    Official Symbol
    HSD17B2-AS1provided by HGNC
    Official Full Name
    HSD17B2 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:56281
    See related
    AllianceGenome:HGNC:56281
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See HSD17B2-AS1 in Genome Data Viewer
    Location:
    16q23.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (82044336..82066766, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (88108043..88130476, complement)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene phospholipase C gamma 2 Neighboring gene NANOG hESC enhancer GRCh37_chr16:82009174-82009740 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:82011207-82011762 Neighboring gene RN7SK pseudogene 176 Neighboring gene uncharacterized LOC112268169 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7764 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11225 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11226 Neighboring gene short chain dehydrogenase/reductase family 42E, member 1 Neighboring gene hydroxysteroid 17-beta dehydrogenase 2 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr16:82103975-82105174 Neighboring gene MT-CYB pseudogene 28 Neighboring gene MT-ND6 pseudogene 28

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. A long non-coding RNA as a direct vitamin D target transcribed from the antisense strand of the human HSD17B2 locus. Kanemoto Y, et al. Biosci Rep, 2022 May 27. PMID 35510872, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    Genotypes

    General gene information

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    Other Names

    • AS-HSD17beta2
    • RP11-510J16.5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      82044336..82066766 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_933797.3 RNA Sequence

    2. XR_933796.3 RNA Sequence

    3. XR_007065140.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      88108043..88130476 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007086705.1 RNA Sequence

    2. XR_007086707.1 RNA Sequence

    3. XR_007086706.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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