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    PUM2 pumilio RNA binding family member 2 [ Anas platyrhynchos (mallard) ]

    Gene ID: 101804988, updated on 8-Mar-2024

    Summary

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    Gene symbol
    PUM2
    Gene description
    pumilio RNA binding family member 2
    Locus tag
    Anapl_01213
    See related
    EnsemblRapid:ENSAPLG00030004589
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anas platyrhynchos
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
    Orthologs
    human mouse all
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    Genomic context

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    See PUM2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    104 current ZJU1.0 (GCF_015476345.1) 3 NC_051774.1 (109446311..109523000, complement)
    103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 3 NC_040048.1 (108087694..108158716, complement)

    Chromosome 3 - NC_051774.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113843336 Neighboring gene syndecan 1 Neighboring gene uncharacterized LOC110351548 Neighboring gene b(0,+)-type amino acid transporter 1 Neighboring gene ras-like GTP-binding protein RHO

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in miRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mRNA stability IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pumilio homolog 2
    Names
    Pumilio-like protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ZJU1.0 Primary Assembly

    Genomic

    1. NC_051774.1 Reference ZJU1.0 Primary Assembly

      Range
      109446311..109523000 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038177386.1 → XP_038033314.1  pumilio homolog 2 isoform X5

      UniProtKB/TrEMBL
      R0LKH1
      Related
      ENSAPLP00030009740.1, ENSAPLT00030012539.1
      Conserved Domains (1) summary
      cd07920
      Location:719 → 1042
      Pumilio; Pumilio-family RNA binding domain

    2. XM_038177383.1 → XP_038033311.1  pumilio homolog 2 isoform X2

      UniProtKB/TrEMBL
      R0LKH1
      Conserved Domains (1) summary
      cd07920
      Location:757 → 1080
      Pumilio; Pumilio-family RNA binding domain

    3. XM_038177382.1 → XP_038033310.1  pumilio homolog 2 isoform X1

      UniProtKB/TrEMBL
      R0LKH1
      Conserved Domains (1) summary
      cd07920
      Location:758 → 1081
      Pumilio; Pumilio-family RNA binding domain

    4. XM_038177385.1 → XP_038033313.1  pumilio homolog 2 isoform X4

      UniProtKB/TrEMBL
      A0A493T9Z9
      Conserved Domains (1) summary
      cd07920
      Location:757 → 1078
      Pumilio; Pumilio-family RNA binding domain

    5. XM_038177389.1 → XP_038033317.1  pumilio homolog 2 isoform X8

      Conserved Domains (1) summary
      cd07920
      Location:537 → 860
      Pumilio; Pumilio-family RNA binding domain

    6. XM_038177384.1 → XP_038033312.1  pumilio homolog 2 isoform X3

      UniProtKB/TrEMBL
      A0A493T9Z9
      Related
      ENSAPLP00030009612.1, ENSAPLT00030012351.1
      Conserved Domains (1) summary
      cd07920
      Location:758 → 1079
      Pumilio; Pumilio-family RNA binding domain

    7. XM_038177387.1 → XP_038033315.1  pumilio homolog 2 isoform X6

      UniProtKB/TrEMBL
      R0LKH1
      Conserved Domains (1) summary
      cd07920
      Location:679 → 1002
      Pumilio; Pumilio-family RNA binding domain

    8. XM_038177388.1 → XP_038033316.1  pumilio homolog 2 isoform X7

      UniProtKB/TrEMBL
      A0A493T9Z9
      Related
      ENSAPLP00030009661.1, ENSAPLT00030012427.1
      Conserved Domains (1) summary
      cd07920
      Location:679 → 1000
      Pumilio; Pumilio-family RNA binding domain
    Nucleotide Protein
    Heading Accession and Version

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