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    • The following terms were not found in Gene: 1C16.1, LL21NC02-1C16.1.

    BNAT1 breast cancer associated ESR1 regulating natural antisense transcript 1 [ Homo sapiens (human) ]

    Gene ID: 101928745, updated on 28-Oct-2024

    Summary

    Official Symbol
    BNAT1provided by HGNC
    Official Full Name
    breast cancer associated ESR1 regulating natural antisense transcript 1provided by HGNC
    Primary source
    HGNC:HGNC:56666
    See related
    AllianceGenome:HGNC:56666
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LL21NC02-21A1.1
    Expression
    Broad expression in kidney (RPKM 6.4), fat (RPKM 4.4) and 18 other tissues See more
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    Genomic context

    See BNAT1 in Genome Data Viewer
    Location:
    21q22.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (45403806..45406362, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (43769585..43772119, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (46823721..46826277, complement)

    Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46790350-46790860 Neighboring gene uncharacterized LOC124905041 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:46796710-46796898 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46799692-46800692 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46800693-46801692 Neighboring gene MT-CO1 pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46808325-46809136 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46812138-46812638 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46824235-46824935 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46827875-46828666 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46828667-46829459 Neighboring gene COL18A1 antisense RNA 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46833102-46833725 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46834349-46834972 Neighboring gene collagen type XVIII alpha 1 chain Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46834973-46835596 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46838464-46839218 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46839219-46839973 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46839974-46840729 Neighboring gene COL18A1 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46841485-46842239 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46844008-46844605 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46844606-46845204

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_183526.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX322562
    2. NR_183527.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX322562
    3. NR_183528.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX322562

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

      Range
      45403806..45406362 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_025791815.1 Reference GRCh38.p14 PATCHES

      Range
      21041..23597 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060945.1 Alternate T2T-CHM13v2.0

      Range
      43769585..43772119 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)