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    LINC02445 long intergenic non-protein coding RNA 2445 [ Homo sapiens (human) ]

    Gene ID: 105369840, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC02445provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2445provided by HGNC
    Primary source
    HGNC:HGNC:53377
    See related
    AllianceGenome:HGNC:53377
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02445 in Genome Data Viewer
    Location:
    12q21.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (73758657..73846177)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (73735985..73823496)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene ribosomal protein L31 pseudogene 48 Neighboring gene RNA, U6 small nuclear 1012, pseudogene Neighboring gene U8 small nucleolar RNA Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:74163268-74164467 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:74371981-74372553 Neighboring gene long intergenic non-protein coding RNA 2394 Neighboring gene MPRA-validated peak1834 silencer Neighboring gene long intergenic non-protein coding RNA 2882 Neighboring gene SURP and G-patch domain containing 1 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:74564879-74565379

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      73758657..73846177
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007063369.1 RNA Sequence

    2. XR_945092.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      73735985..73823496
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007083472.1 RNA Sequence

    2. XR_007083471.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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