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    LOC105371085 uncharacterized LOC105371085 [ Homo sapiens (human) ]

    Gene ID: 105371085, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105371085
    Gene description
    uncharacterized LOC105371085
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105371085 in Genome Data Viewer
    Location:
    16p13.12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (12530917..12611142, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (12566287..12598187, complement)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene sorting nexin 29 Neighboring gene uncharacterized LOC101927227 Neighboring gene uncharacterized LOC105371087 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:12479845-12480345 Neighboring gene Sharpr-MPRA regulatory region 12750 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10469 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10470 Neighboring gene Sharpr-MPRA regulatory region 5052 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:12529425-12530112 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:12530113-12530799 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:12532613-12533114 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10471 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:12561965-12562466 Neighboring gene uncharacterized LOC124903644 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:12612096-12612755 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:12616566-12617066 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:12620609-12621109 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7219 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10472 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10473 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10474 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10475 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10476 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:12685995-12686514 Neighboring gene CRISPRi-validated cis-regulatory element chr16.1337 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:12707003-12708202 Neighboring gene Sharpr-MPRA regulatory region 11276 Neighboring gene uncharacterized LOC105371088 Neighboring gene Sharpr-MPRA regulatory region 10358 Neighboring gene calcineurin like phosphoesterase domain containing 1 Neighboring gene microRNA 4718

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    General gene information

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    Other Names

    • CTD-3037G24.4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      12530917..12611142 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007064990.1 RNA Sequence

    2. XR_007064988.1 RNA Sequence

    3. XR_933080.4 RNA Sequence

    4. XR_007064987.1 RNA Sequence

    5. XR_007064989.1 RNA Sequence

    6. XR_007064991.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      12566287..12598187 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007086895.1 RNA Sequence

    2. XR_007086893.1 RNA Sequence

    3. XR_007086894.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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