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    FP3 farnesylated protein 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836472, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FP3
    Official Full Name
    farnesylated protein 3
    Primary source
    TAIR:AT5G63530
    Locus tag
    AT5G63530
    See related
    Araport:AT5G63530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3; ATFP3; farnesylated protein 3; MLE2.16; MLE2_16
    Summary
    Farnesylated protein that binds metals.
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    Genomic context

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    See FP3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (25432890..25435834)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene gamma carbonic anhydrase like 1 Neighboring gene F-box/LRR protein Neighboring gene ncRNA Neighboring gene recQ-mediated instability protein (DUF1767)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new class of proteins capable of binding transition metals. Dykema PE, et al. Plant Mol Biol, 1999 Sep. PMID 10561075
    2. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001085321.2
    NM_125748.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transition metal ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    farnesylated protein 3
    NP_001078790.1
    • farnesylated protein 3 (FP3); FUNCTIONS IN: transition metal ion binding, metal ion binding; INVOLVED IN: cellular transition metal ion homeostasis; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G50740.1); Has 5078 Blast hits to 3127 proteins in 372 species: Archae - 4; Bacteria - 284; Metazoa - 1364; Fungi - 240; Plants - 2332; Viruses - 113; Other Eukaryotes - 741 (source: NCBI BLink).
    NP_568974.1
    • farnesylated protein 3 (FP3); FUNCTIONS IN: transition metal ion binding, metal ion binding; INVOLVED IN: cellular transition metal ion homeostasis; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G50740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25432890..25435834
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125748.3 → NP_568974.1  farnesylated protein 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568974.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C5D3, Q9FMU9, Q9ZRE7
      UniProtKB/TrEMBL
      A0A178UNW0, A0A5S9YHV8, A0A654GDU4
      Conserved Domains (1) summary
      cd00371
      Location:81 → 136
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...

    2. NM_001085321.2 → NP_001078790.1  farnesylated protein 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078790.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UNW0
      Conserved Domains (1) summary
      cd00371
      Location:66 → 121
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C5D3.1

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