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    Cytochrome c oxidase, subunit Vib family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835912, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cytochrome c oxidase, subunit Vib family protein
    Primary source
    TAIR:AT5G58005
    Locus tag
    AT5G58005
    See related
    Araport:AT5G58005
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (23482179..23483277)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Reticulon family protein Neighboring gene C-terminal domain phosphatase-like 4 Neighboring gene LJRHL1-like 3 Neighboring gene RTF2 RING-finger protein Neighboring gene Transport protein particle (TRAPP) component

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001037015.1
    NM_148148.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of respiratory chain complex IV IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Cytochrome c oxidase, subunit Vib family protein
    NP_001032092.1
    • Cytochrome c oxidase, subunit Vib family protein; FUNCTIONS IN: cytochrome-c oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit VIb (InterPro:IPR003213); Has 136 Blast hits to 136 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 50; Fungi - 38; Plants - 46; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_680453.1
    • Cytochrome c oxidase, subunit Vib family protein; FUNCTIONS IN: cytochrome-c oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit VIb (InterPro:IPR003213); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23482179..23483277
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_148148.5 → NP_680453.1  Cytochrome c oxidase, subunit Vib family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_680453.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UFW9, Q8RXH9
      Conserved Domains (1) summary
      pfam02297
      Location:23 → 86
      COX6B; Cytochrome oxidase c subunit VIb

    2. NM_001037015.1 → NP_001032092.1  Cytochrome c oxidase, subunit Vib family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001032092.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UFW9, Q8RXH9
      Conserved Domains (1) summary
      pfam02297
      Location:23 → 86
      COX6B; Cytochrome oxidase c subunit VIb
    Nucleotide Protein
    Heading Accession and Version

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