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    uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 6241037, updated on 18-Sep-2024

    Summary

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    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT5G44585
    Locus tag
    AT5G44585
    See related
    Araport:AT5G44585
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (17984527..17986431)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The peptide SCOOP12 acts on reactive oxygen species homeostasis to modulate cell division and elongation in Arabidopsis primary root. Guillou MC, et al. J Exp Bot, 2022 Oct 18. PMID 35639812
    2. The Arabidopsis MIK2 receptor elicits immunity by sensing a conserved signature from phytocytokines and microbes. Hou S, et al. Nat Commun, 2021 Sep 17. PMID 34535661, Free PMC Article
    3. Perception of a divergent family of phytocytokines by the Arabidopsis receptor kinase MIK2. Rhodes J, et al. Nat Commun, 2021 Jan 29. PMID 33514716, Free PMC Article
    4. The MIK2/SCOOP Signaling System Contributes to Arabidopsis Resistance Against Herbivory by Modulating Jasmonate and Indole Glucosinolate Biosynthesis. Stahl E, et al. Front Plant Sci, 2022. PMID 35401621, Free PMC Article
    5. The SCOOP12 peptide regulates defense response and root elongation in Arabidopsis thaliana. Gully K, et al. J Exp Bot, 2019 Feb 20. PMID 30715439, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001125900.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables LRR domain binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables receptor serine/threonine kinase binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-cell signaling involved in cell fate commitment IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in defense response to insect IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in defense response to insect IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within_positive_effect indole glucosinolate biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within_positive_effect jasmonic acid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of reactive oxygen species metabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in negative regulation of reactive oxygen species metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_negative_effect plant-type cell wall organization IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in reactive oxygen species biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of defense response to bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of reactive oxygen species metabolic process IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in regulation of root development IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of root meristem growth IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of unidimensional cell growth IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in response to bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within_positive_effect response to herbivore IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to insect IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endoplasmic reticulum RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in extracellular region RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_001119372.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17984527..17986431
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001125900.2 → NP_001119372.1  uncharacterized protein AT5G44585 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119372.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B3H7I1
      UniProtKB/TrEMBL
      A0A178UPI0
    Nucleotide Protein
    Heading Accession and Version

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