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    [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833959, updated on 22-Aug-2024

    Summary

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    Primary source
    TAIR:AT5G39630
    Locus tag
    AT5G39630
    See related
    Araport:AT5G39630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MIJ24.100; MIJ24_100
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (15868262..15869714)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene NAC domain containing protein 6 Neighboring gene RAB GTPase homolog G1 Neighboring gene ncRNA Neighboring gene Putative endonuclease or glycosyl hydrolase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors. Sanderfoot AA, et al. Plant Physiol, 2000 Dec. PMID 11115874, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables SNARE binding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within intra-Golgi vesicle-mediated transport TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Vesicle transport v-SNARE family protein
    NP_198779.1
    • Vesicle transport v-SNARE family protein; FUNCTIONS IN: SNARE binding, receptor activity; INVOLVED IN: cellular membrane fusion, intra-Golgi vesicle-mediated transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE, N-terminal (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: Vesicle transport v-SNARE family protein (TAIR:AT5G39510.1); Has 1365 Blast hits to 1171 proteins in 272 species: Archae - 32; Bacteria - 107; Metazoa - 393; Fungi - 191; Plants - 155; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15868262..15869714
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123325.1 → NP_198779.1  Vesicle transport v-SNARE family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198779.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G6K4, A0MFK3, Q1PDQ2
      Conserved Domains (2) summary
      cd15862
      Location:123 → 184
      SNARE_Vti1; SNARE motif of Vti1
      pfam05008
      Location:12 → 89
      V-SNARE; Vesicle transport v-SNARE protein N-terminus
    Nucleotide Protein
    Heading Accession and Version

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