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    TRM20 methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828997, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TRM20
    Official Full Name
    methyl-coenzyme M reductase II subunit gamma, putative (DUF3741)
    Primary source
    TAIR:AT4G28760
    Locus tag
    AT4G28760
    See related
    Araport:AT4G28760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16A16.130; F16A16_130; TON1 Recruiting Motif 20
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    Genomic context

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    See TRM20 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (14207460..14212050)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Glutaredoxin family protein Neighboring gene LOW PSII ACCUMULATION-like protein Neighboring gene Photosystem I reaction centre subunit IV / PsaE protein Neighboring gene uncharacterized protein Neighboring gene Tetraspanin family protein Neighboring gene uncharacterized protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The C-terminal region (640-967) of Arabidopsis CPL1 interacts with the abiotic stress- and ABA-responsive transcription factors. Bang WY, et al. Biochem Biophys Res Commun, 2008 Aug 8. PMID 18541146
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_119020.3
    NM_202904.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    methyl-coenzyme M reductase II subunit gamma, putative (DUF3741)
    NP_567819.1
    • Protein of unknown function (DUF3741); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT2G20240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974633.1
    • Protein of unknown function (DUF3741); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT2G20240.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14207460..14212050
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202904.2 → NP_974633.1  methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974633.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V4K9, Q949M4
      Conserved Domains (2) summary
      pfam12552
      Location:204 → 248
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:752 → 917
      DUF4378; Domain of unknown function (DUF4378)

    2. NM_119020.3 → NP_567819.1  methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567819.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V4K9, Q949M4
      Conserved Domains (2) summary
      pfam12552
      Location:204 → 248
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:752 → 917
      DUF4378; Domain of unknown function (DUF4378)
    Nucleotide Protein
    Heading Accession and Version

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