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    ELP6 elongator protein 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826600, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ELP6
    Official Full Name
    elongator protein 6
    Primary source
    TAIR:AT4G10090
    Locus tag
    AT4G10090
    See related
    Araport:AT4G10090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    elongator protein 6; F28M11.10; F28M11_10
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    Genomic context

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    See ELP6 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (6305320..6307552)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Beta-glucosidase, GBA2 type family protein Neighboring gene KH domain-containing protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene co-factor for nitrate, reductase and xanthine dehydrogenase 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis Elongator post-transcriptionally modulates PIN protein levels.
      Title: Meta-regulation of Arabidopsis auxin responses depends on tRNA maturation.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_117077.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within auxin polar transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of anthocyanin metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of cell population proliferation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of leaf development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to oxidative stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within root morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within shoot system morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in tRNA wobble uridine modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of elongator holoenzyme complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    elongator protein 6
    NP_567351.1
    • elongator protein 6 (ELP6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2348 (InterPro:IPR018627); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6305320..6307552
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117077.4 → NP_567351.1  elongator protein 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567351.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0Z343, Q8L9Y2, Q9SN32
      UniProtKB/TrEMBL
      A0A178V2M9, A0A5S9XSP7, A0A654FMY2, A0A7G2EYM8
      Conserved Domains (1) summary
      cd19495
      Location:27 → 258
      Elp6; Elongator subcomplex subunit Elp6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L9Y2.1

    Gene LinkOut

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