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    cotton fiber protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825209, updated on 18-Sep-2024

    Summary

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    Official Full Name
    cotton fiber protein
    Primary source
    TAIR:AT3G60380
    Locus tag
    AT3G60380
    See related
    Araport:AT3G60380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (22316771..22319628, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene embryo sac development arrest 14 Neighboring gene FKBP-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene homeobox-leucine zipper protein 3 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_115902.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    cotton fiber protein
    NP_191597.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT4G16790.1); Has 6102 Blast hits to 3981 proteins in 424 species: Archae - 6; Bacteria - 372; Metazoa - 2603; Fungi - 655; Plants - 291; Viruses - 28; Other Eukaryotes - 2147 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22316771..22319628 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115902.3 → NP_191597.1  cotton fiber protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191597.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XMK1, A0A654FJG6, Q9M221
      Conserved Domains (1) summary
      pfam05553
      Location:700 → 725
      DUF761; Cotton fibre expressed protein
    Nucleotide Protein
    Heading Accession and Version

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