RING/U-box superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: RING/U-box superfamily protein
Primary source: TAIR:AT3G53690
Locus tag: AT3G53690
See related: Araport:AT3G53690
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F5K20.1
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 2

Sequence:: Chromosome: 3; NC_003074.8 (19898788..19900235, complement)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

MASC_STS13447 (e-PCR)
- UniSTS:258631

Homology

Orthologs from OrthoDB

NM_115229.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables ubiquitin-protein transferase activity	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in protein ubiquitination	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: RING/U-box superfamily protein

NP_190937.1

RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G14250.1); Has 3158 Blast hits to 3141 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 1307; Fungi - 709; Plants - 671; Viruses - 0; Other Eukaryotes - 471 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

19898788..19900235 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_115229.4 → NP_190937.1 RING/U-box superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_190937.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178V7C1, A0A384KKK3, A0A5S9XKI5, Q9LFF2

Conserved Domains (4) summary

smart00647
Location:183 → 246

IBR; In Between Ring fingers

cd00162
Location:115 → 164

RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]

pfam01485
Location:262 → 307

IBR; IBR domain, a half RING-finger domain

cl17238
Location:113 → 165

RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain