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    S1FA-like DNA-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824505, updated on 18-Sep-2024

    Summary

    Official Full Name
    S1FA-like DNA-binding protein
    Primary source
    TAIR:AT3G53370
    Locus tag
    AT3G53370
    See related
    Araport:AT3G53370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (19787852..19788907, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene Concanavalin A-like lectin protein kinase family protein Neighboring gene Transducin/WD40 repeat-like superfamily protein

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001203148.1
    NM_115197.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    S1FA-like DNA-binding protein
    NP_001190077.1
    • S1FA-like DNA-binding protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA binding protein S1FA (InterPro:IPR006779).
    NP_566985.1
    • S1FA-like DNA-binding protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA binding protein S1FA (InterPro:IPR006779); BEST Arabidopsis thaliana protein match is: S1FA-like DNA-binding protein (TAIR:AT2G37120.1); Has 76 Blast hits to 76 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19787852..19788907 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115197.3NP_566985.1  S1FA-like DNA-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566985.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P42551, Q9LFI0
      UniProtKB/TrEMBL
      A0A5S9XKQ1, A0A654FHU9
      Conserved Domains (1) summary
      pfam04689
      Location:1776
      S1FA; DNA binding protein S1FA
    2. NM_001203148.1NP_001190077.1  S1FA-like DNA-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190077.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J9D1