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    hypothetical protein (DUF1216) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822516, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (DUF1216)
    Primary source
    TAIR:AT3G28840
    Locus tag
    AT3G28840
    See related
    Araport:AT3G28840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (10838395..10840059)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) Neighboring gene mucin-like protein, putative (DUF1216) Neighboring gene Glutaredoxin family protein Neighboring gene B3 DNA-binding domain protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_113805.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (DUF1216)
    NP_189526.1
    • Protein of unknown function (DUF1216); LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1216) (TAIR:AT3G28780.1); Has 206629 Blast hits to 66457 proteins in 3054 species: Archae - 425; Bacteria - 97961; Metazoa - 34248; Fungi - 11436; Plants - 13647; Viruses - 2653; Other Eukaryotes - 46259 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10838395..10840059
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113805.5 → NP_189526.1  hypothetical protein (DUF1216) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189526.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FBL0, Q058M7
      Conserved Domains (1) summary
      pfam06746
      Location:70 → 173
      DUF1216; Protein of unknown function (DUF1216)
    Nucleotide Protein
    Heading Accession and Version

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