U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    SGF29a SGF29 tudor-like domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822367, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SGF29a
    Official Full Name
    SGF29 tudor-like domain-containing protein
    Primary source
    TAIR:AT3G27460
    Locus tag
    AT3G27460
    See related
    Araport:AT3G27460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtSGF29a; SaGa associated Factor 29 a
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SGF29a in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (10159221..10162323, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein Neighboring gene uridine kinase-like 5 Neighboring gene miscRNA Neighboring gene lysine ketoglutarate reductase trans-splicing protein (DUF707) Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Arabidopsis thaliana transcriptional co-activators ADA2b and SGF29a are implicated in salt stress responses. Kaldis A, et al. Planta, 2011 Apr. PMID 21193996
    2. A proteomic study of the arabidopsis nuclear matrix. Calikowski TT, et al. J Cell Biochem, 2003 Oct 1. PMID 14505352
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Two orthologs of yeast SGF29 in Arabidopsis, SGF29a and SGF29b, may work in concert with ADA2b to regulate genes in response to abiotic stress. [SGF29a]
      Title: Arabidopsis thaliana transcriptional co-activators ADA2b and SGF29a are implicated in salt stress responses.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    NM_001161178.2
    NM_001338876.1
    NM_001338877.1
    NM_113661.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SAGA complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    SGF29 tudor-like domain-containing protein
    NP_001154650.1
    • SGF29 tudor-like domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SAGA-associated factor 29 (InterPro:IPR010750); BEST Arabidopsis thaliana protein match is: SGF29 tudor-like domain (TAIR:AT5G40550.2); Has 324 Blast hits to 324 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 113; Plants - 51; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
    NP_189382.2
    • SGF29 tudor-like domain; CONTAINS InterPro DOMAIN/s: SAGA-associated factor 29 (InterPro:IPR010750); BEST Arabidopsis thaliana protein match is: SGF29 tudor-like domain (TAIR:AT5G40550.2); Has 319 Blast hits to 319 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 112; Plants - 46; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10159221..10162323 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338875.1 → NP_001326215.1  SGF29 tudor-like domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMK4, A0A1I9LNL1

    2. NM_113661.4 → NP_189382.2  SGF29 tudor-like domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189382.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RXY6, Q9LTY5
      UniProtKB/TrEMBL
      A0A178VMK4
      Conserved Domains (2) summary
      pfam07039
      Location:131 → 265
      DUF1325; SGF29 tudor-like domain
      cl26128
      Location:6 → 47
      tRNA-synt_1g; tRNA synthetases class I (M)

    3. NM_001161178.2 → NP_001154650.1  SGF29 tudor-like domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154650.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VND3, F4IWI8
      Conserved Domains (1) summary
      pfam07039
      Location:130 → 264
      DUF1325; SGF29 tudor-like domain

    4. NM_001338876.1 → NP_001326214.1  SGF29 tudor-like domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMK4, A0A1I9LNL0, A0A654FGL3
      Conserved Domains (1) summary
      pfam07039
      Location:133 → 267
      DUF1325; SGF29 tudor-like domain

    5. NM_001338877.1 → NP_001326213.1  SGF29 tudor-like domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMK4, A0A1I9LNK9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RXY6.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools