U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    MAP kinase kinase kinase, putative (DUF1644) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822188, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    MAP kinase kinase kinase, putative (DUF1644)
    Primary source
    TAIR:AT3G25910
    Locus tag
    AT3G25910
    See related
    Araport:AT3G25910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (9489221..9491130)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Homocysteine S-methyltransferase family protein Neighboring gene CLAVATA3/ESR-RELATED 27 Neighboring gene ncRNA Neighboring gene ribosomal protein L15 Neighboring gene Adenine nucleotide alpha hydrolases-like superfamily protein Neighboring gene TFIIB zinc-binding protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. AtSIZ1 improves salt tolerance by maintaining ionic homeostasis and osmotic balance in Arabidopsis. Han G, et al. Plant Sci, 2019 Aug. PMID 31203894
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Results indicate that AtSIZ1 improves salt tolerance in Arabidopsis by helping plants maintain ionic homeostasis and osmotic balance.
      Title: AtSIZ1 improves salt tolerance by maintaining ionic homeostasis and osmotic balance in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    NM_113495.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within intracellular monoatomic ion homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    MAP kinase kinase kinase, putative (DUF1644)
    NP_566784.1
    • FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT3G24740.2); Has 1139 Blast hits to 687 proteins in 95 species: Archae - 0; Bacteria - 20; Metazoa - 459; Fungi - 70; Plants - 423; Viruses - 6; Other Eukaryotes - 161 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9489221..9491130
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113495.3 → NP_566784.1  MAP kinase kinase kinase, putative (DUF1644) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566784.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V647, A0A654FAR9, Q9LUA0
      Conserved Domains (1) summary
      pfam07800
      Location:39 → 255
      DUF1644; Protein of unknown function (DUF1644)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools