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    ubiquinone biosynthesis protein (Protein of unknown function, DUF547) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820486, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ubiquinone biosynthesis protein (Protein of unknown function, DUF547)
    Primary source
    TAIR:AT3G13000
    Locus tag
    AT3G13000
    See related
    Araport:AT3G13000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MGH6.15; MGH6_15
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    12
    Sequence:
    Chromosome: 3; NC_003074.8 (4157713..4162065, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene histone acetyltransferase of the CBP family 5 Neighboring gene miscRNA Neighboring gene ribonuclease PH45A Neighboring gene hAT transposon superfamily protein Neighboring gene hAT transposon superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001338019.1
    NM_112137.4
    NM_202568.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    ubiquinone biosynthesis protein (Protein of unknown function, DUF547)
    NP_187906.2
    • Protein of unknown function, DUF547; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT1G16750.1); Has 738 Blast hits to 726 proteins in 118 species: Archae - 2; Bacteria - 127; Metazoa - 26; Fungi - 3; Plants - 527; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
    NP_974297.1
    • Protein of unknown function, DUF547; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT1G16750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4157713..4162065 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202568.3 → NP_974297.1  ubiquinone biosynthesis protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974297.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V674, A0A178V7L6, A0A384KD50, Q56W79
      Conserved Domains (2) summary
      pfam04784
      Location:368 → 497
      DUF547; Protein of unknown function, DUF547
      pfam14389
      Location:48 → 123
      Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1

    2. NM_112137.4 → NP_187906.2  ubiquinone biosynthesis protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187906.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7L6, Q9LSH9
      Conserved Domains (2) summary
      pfam04784
      Location:334 → 468
      DUF547; Protein of unknown function, DUF547
      pfam14389
      Location:19 → 96
      Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1

    3. NM_001338019.1 → NP_001327605.1  ubiquinone biosynthesis protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V674, A0A178V7L6, A0A384KD50, Q56W79
      Conserved Domains (2) summary
      pfam04784
      Location:368 → 497
      DUF547; Protein of unknown function, DUF547
      pfam14389
      Location:48 → 123
      Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1
    Nucleotide Protein
    Heading Accession and Version

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