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    RPS5A ribosomal protein 5A [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820367, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPS5A
    Official Full Name
    ribosomal protein 5A
    Primary source
    TAIR:AT3G11940
    Locus tag
    AT3G11940
    See related
    Araport:AT3G11940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AML1; ARABIDOPSIS MINUTE-LIKE 1; ATRPS5A; MEC18.11; ribosomal protein 5A
    Summary
    One of two genes encoding the ribosomal protein S5. Mutants have semi-dominant developmental phenotypes. Most cell-division processes are delayed or disturbed in the heterozygous mutant, and development is completely arrested at an early embryonic stage in the homozygous mutant.
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    Genomic context

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    See RPS5A in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (3777824..3779545, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene glutaredoxin-like protein Neighboring gene Adenine nucleotide alpha hydrolases-like superfamily protein Neighboring gene homogentisate prenyltransferase Neighboring gene TRAF-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
    2. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
    3. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764
    4. Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings. Igawa T, et al. J Exp Bot, 2009. PMID 19429840, Free PMC Article
    5. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_112027.2
    NM_180233.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 
    located_in plant-type cell wall HDA PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plasmodesma HDA PubMed 
    part_of small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ribosomal protein 5A
    NP_187800.1
    • ribosomal protein 5A (RPS5A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7, conserved site (InterPro:IPR020606), Ribosomal protein S7, eukaryotic/archaeal (InterPro:IPR005716), Ribosomal protein S7 (InterPro:IPR000235); BEST Arabidopsis thaliana protein match is: ribosomal protein 5B (TAIR:AT2G37270.2); Has 8664 Blast hits to 8664 proteins in 3504 species: Archae - 243; Bacteria - 4586; Metazoa - 986; Fungi - 184; Plants - 1132; Viruses - 0; Other Eukaryotes - 1533 (source: NCBI BLink).
    NP_850564.1
    • ribosomal protein 5A (RPS5A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7, conserved site (InterPro:IPR020606), Ribosomal protein S7, eukaryotic/archaeal (InterPro:IPR005716), Ribosomal protein S7 (InterPro:IPR000235); BEST Arabidopsis thaliana protein match is: ribosomal protein 5B (TAIR:AT2G37270.2); Has 8664 Blast hits to 8664 proteins in 3504 species: Archae - 243; Bacteria - 4586; Metazoa - 986; Fungi - 184; Plants - 1132; Viruses - 0; Other Eukaryotes - 1533 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3777824..3779545 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180233.3 → NP_850564.1  ribosomal protein 5A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850564.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P51427, Q9SF05
      UniProtKB/TrEMBL
      A0A178VED6, A0A5S9XB80
      Conserved Domains (1) summary
      cd14867
      Location:20 → 207
      uS7_Eukaryote; Eukaryota homolog of Ribosomal Protein S7

    2. NM_112027.2 → NP_187800.1  ribosomal protein 5A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187800.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P51427, Q9SF05
      UniProtKB/TrEMBL
      A0A178VED6, A0A5S9XB80
      Conserved Domains (1) summary
      cd14867
      Location:20 → 207
      uS7_Eukaryote; Eukaryota homolog of Ribosomal Protein S7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P51427.2

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