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    Nuclear transport factor 2 (NTF2) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820081, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Nuclear transport factor 2 (NTF2) family protein
    Primary source
    TAIR:AT3G09250
    Locus tag
    AT3G09250
    See related
    Araport:AT3G09250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (2838943..2840614)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene laccase 7 Neighboring gene myb domain protein 1 Neighboring gene kinase with tetratricopeptide repeat domain-containing protein Neighboring gene ncRNA Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene ncRNA Neighboring gene glutathione S-transferase TAU 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001202916.1
    NM_001337810.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Nuclear transport factor 2 (NTF2) family protein
    NP_001189845.1
    • Nuclear transport factor 2 (NTF2) family protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: nucleotide-excision repair; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein (TAIR:AT4G10925.3).
    NP_566347.1
    • Nuclear transport factor 2 (NTF2) family protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: nucleotide-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein (TAIR:AT4G10925.3); Has 282 Blast hits to 282 proteins in 97 species: Archae - 0; Bacteria - 155; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2838943..2840614
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111759.4 → NP_566347.1  Nuclear transport factor 2 (NTF2) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566347.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FAP8, Q9SR38
      Conserved Domains (2) summary
      pfam02151
      Location:88 → 118
      UVR; UvrB/uvrC motif
      pfam13474
      Location:124 → 241
      SnoaL_3; SnoaL-like domain

    2. NM_001202916.1 → NP_001189845.1  Nuclear transport factor 2 (NTF2) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189845.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IZV9
      Conserved Domains (2) summary
      pfam02151
      Location:74 → 105
      UVR; UvrB/uvrC motif
      pfam13474
      Location:110 → 218
      SnoaL_3; SnoaL-like domain

    3. NM_001337810.1 → NP_001327225.1  Nuclear transport factor 2 (NTF2) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFU5, A0A1I9LRN3, A0A384KB92
      Conserved Domains (2) summary
      pfam02151
      Location:74 → 104
      UVR; UvrB/uvrC motif
      pfam13474
      Location:110 → 227
      SnoaL_3; SnoaL-like domain
    Nucleotide Protein
    Heading Accession and Version

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