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    transmembrane protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819214, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein-like protein
    Primary source
    TAIR:AT2G46060
    Locus tag
    AT2G46060
    See related
    Araport:AT2G46060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T3F17.29
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    14
    Sequence:
    Chromosome: 2; NC_003071.7 (18941099..18945112, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene mitogen-activated protein kinase 12 Neighboring gene BPS1-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001337176.1
    NM_180113.3
    NM_180114.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein-like protein
    NP_850444.1
    • transmembrane protein-related; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3522 (InterPro:IPR021910), EGF-like region, conserved site (InterPro:IPR013032); Has 154 Blast hits to 154 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
    NP_850445.1
    • transmembrane protein-related; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3522 (InterPro:IPR021910), EGF-like region, conserved site (InterPro:IPR013032); Has 154 Blast hits to 154 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18941099..18945112 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180113.3 → NP_850444.1  transmembrane protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850444.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VS34, A0A5S9X844, Q8RWX6
      Conserved Domains (1) summary
      pfam12036
      Location:560 → 766
      DUF3522; Protein of unknown function (DUF3522)

    2. NM_001337176.1 → NP_001323926.1  transmembrane protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VS34, A0A1P8AYH4

    3. NM_180114.3 → NP_850445.1  transmembrane protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850445.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EGM5, Q8W0Z5
      Conserved Domains (1) summary
      pfam12036
      Location:564 → 761
      DUF3522; Protein of unknown function (DUF3522)
    Nucleotide Protein
    Heading Accession and Version

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