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    WEB family protein (DUF827) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818643, updated on 18-Sep-2024

    Summary

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    Official Full Name
    WEB family protein (DUF827)
    Primary source
    TAIR:AT2G40480
    Locus tag
    AT2G40480
    See related
    Araport:AT2G40480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T2P4.17; T2P4_17
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (16910167..16912616)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene LOB domain-containing protein 15 Neighboring gene uncharacterized protein Neighboring gene Uroporphyrinogen decarboxylase Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_129610.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    WEB family protein (DUF827)
    NP_181580.2
    • Plant protein of unknown function (DUF827); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT3G56270.1); Has 1092 Blast hits to 990 proteins in 183 species: Archae - 2; Bacteria - 84; Metazoa - 493; Fungi - 73; Plants - 232; Viruses - 1; Other Eukaryotes - 207 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16910167..16912616
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129610.3 → NP_181580.2  WEB family protein (DUF827) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181580.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22887, Q5XVC7
      UniProtKB/TrEMBL
      A0A5S9X5R9
      Conserved Domains (1) summary
      pfam05701
      Location:56 → 138
      WEMBL; Weak chloroplast movement under blue light
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5XVC7.1

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