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    AT hook motif DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817928, updated on 18-Sep-2024

    Summary

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    Official Full Name
    AT hook motif DNA-binding family protein
    Primary source
    TAIR:AT2G33620
    Locus tag
    AT2G33620
    See related
    Araport:AT2G33620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AHL10; AT-hook motif nuclear localized protein 10; F4P9.39; F4P9_39
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (14234026..14236883)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene switch subunit 3 Neighboring gene ncRNA Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene DHHC-type zinc finger family protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene tRNA-Asp

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197
    3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001124965.1
    NM_128922.3
    NM_179884.4
    NM_201861.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables minor groove of adenine-thymine-rich DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    AT hook motif DNA-binding family protein
    NP_001118437.1
    • AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 1 (TAIR:AT4G12080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_565769.1
    • AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 1 (TAIR:AT4G12080.1); Has 969 Blast hits to 965 proteins in 147 species: Archae - 0; Bacteria - 205; Metazoa - 5; Fungi - 3; Plants - 754; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_850215.1
    • AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 1 (TAIR:AT4G12080.1); Has 969 Blast hits to 965 proteins in 147 species: Archae - 0; Bacteria - 205; Metazoa - 5; Fungi - 3; Plants - 754; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_973590.1
    • AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 1 (TAIR:AT4G12080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14234026..14236883
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001124965.1 → NP_001118437.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118437.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22812, O23142, Q94F52
      UniProtKB/TrEMBL
      A0A178VQE5, A0A5S9X3L8, A0A654EZZ0
      Conserved Domains (1) summary
      pfam03479
      Location:166 → 278
      DUF296; Domain of unknown function (DUF296)

    2. NM_179884.4 → NP_850215.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850215.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22812, O23142, Q94F52
      UniProtKB/TrEMBL
      A0A178VQE5, A0A5S9X3L8, A0A654EZZ0
      Conserved Domains (1) summary
      pfam03479
      Location:166 → 278
      DUF296; Domain of unknown function (DUF296)

    3. NM_201861.3 → NP_973590.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973590.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22812, O23142, Q94F52
      UniProtKB/TrEMBL
      A0A178VQE5, A0A5S9X3L8, A0A654EZZ0
      Conserved Domains (1) summary
      pfam03479
      Location:166 → 278
      DUF296; Domain of unknown function (DUF296)

    4. NM_128922.3 → NP_565769.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565769.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22812, O23142, Q94F52
      UniProtKB/TrEMBL
      A0A178VQE5, A0A5S9X3L8, A0A654EZZ0
      Conserved Domains (1) summary
      pfam03479
      Location:166 → 278
      DUF296; Domain of unknown function (DUF296)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O22812.2

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