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    3BETAHSD/D1 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841132, updated on 18-Sep-2024

    Summary

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    Official Symbol
    3BETAHSD/D1
    Official Full Name
    3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1
    Primary source
    TAIR:AT1G47290
    Locus tag
    AT1G47290
    See related
    Araport:AT1G47290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    3beta-hydroxysteroid- dehydrogenase/decarboxylase isoform 1; 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1; AT3BETAHSD/D; AT3BETAHSD/D1; T3F24.9; T3F24_9
    Summary
    Encodes an enzyme with 3beta-hydroxysteroid dehydrogenase/C4-decarboxylase activity <i>in vitro</i>. The activity of the enzyme was determined using microsomal extracts of yeast overexpressing the <i>Arabidopsis</i> gene. Cytosolic fractions failed to be associated to the activity, leading to the speculation that the enzyme is membrane-bound.
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    Genomic context

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    See 3BETAHSD/D1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (17335751..17339275)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Cystathionine beta-synthase (CBS) family protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene F-box family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Homology modeling and site-directed mutagenesis reveal catalytic key amino acids of 3beta-hydroxysteroid-dehydrogenase/C4-decarboxylase from Arabidopsis. Rahier A, et al. Plant Physiol, 2009 Apr. PMID 19218365, Free PMC Article
    2. Overexpression of 3β-hydroxysteroid dehydrogenases/C-4 decarboxylases causes growth defects possibly due to abnormal auxin transport in Arabidopsis. Kim B, et al. Mol Cells, 2012 Jul. PMID 22673766, Free PMC Article
    3. Molecular and enzymatic characterizations of novel bifunctional 3beta-hydroxysteroid dehydrogenases/C-4 decarboxylases from Arabidopsis thaliana. Rahier A, et al. J Biol Chem, 2006 Sep 15. PMID 16835224
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis 3betaHSD/D genes thus appears to affect auxin transporter activity, possibly by altering sterol composition in the membranes.
      Title: Overexpression of 3β-hydroxysteroid dehydrogenases/C-4 decarboxylases causes growth defects possibly due to abnormal auxin transport in Arabidopsis.
    2. 3betaHSD/D is a bifunctional short-chain dehydrogenase/reductase protein. Three-dimensional homology modeling was used to identify key amino acids involved in 4alpha-carboxy-sterol and NAD binding and catalysis of 3betaHSD/D. [3betaHSD/D]
      Title: Homology modeling and site-directed mutagenesis reveal catalytic key amino acids of 3beta-hydroxysteroid-dehydrogenase/C4-decarboxylase from Arabidopsis.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_103623.5
    NM_179448.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1
    NP_564502.1
    • 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (3BETAHSD/D1); FUNCTIONS IN: 3-beta-hydroxy-delta5-steroid dehydrogenase activity, sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity; INVOLVED IN: steroid biosynthetic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-beta hydroxysteroid dehydrogenase/isomerase (InterPro:IPR002225), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (TAIR:AT2G26260.1); Has 24441 Blast hits to 24428 proteins in 2873 species: Archae - 619; Bacteria - 15419; Metazoa - 693; Fungi - 529; Plants - 1563; Viruses - 132; Other Eukaryotes - 5486 (source: NCBI BLink).
    NP_849779.1
    • 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (3BETAHSD/D1); FUNCTIONS IN: 3-beta-hydroxy-delta5-steroid dehydrogenase activity, sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity; INVOLVED IN: steroid biosynthetic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), 3-beta hydroxysteroid dehydrogenase/isomerase (InterPro:IPR002225); BEST Arabidopsis thaliana protein match is: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (TAIR:AT2G26260.1); Has 24445 Blast hits to 24432 proteins in 2873 species: Archae - 619; Bacteria - 15430; Metazoa - 691; Fungi - 529; Plants - 1560; Viruses - 132; Other Eukaryotes - 5484 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17335751..17339275
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179448.4 → NP_849779.1  3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849779.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0VH36, Q8LER8, Q9FX01
      UniProtKB/TrEMBL
      A0A178WKM2, A0A5S9WMN0
      Conserved Domains (2) summary
      cd09813
      Location:11 → 358
      3b-HSD-NSDHL-like_SDR_e; human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs
      pfam01073
      Location:13 → 288
      3Beta_HSD; 3-beta hydroxysteroid dehydrogenase/isomerase family

    2. NM_103623.5 → NP_564502.1  3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564502.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WKM2, A0A5S9WMN0
      Conserved Domains (2) summary
      cd09813
      Location:11 → 358
      3b-HSD-NSDHL-like_SDR_e; human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs
      pfam01073
      Location:13 → 288
      3Beta_HSD; 3-beta hydroxysteroid dehydrogenase/isomerase family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FX01.1

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