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    Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839294, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein
    Primary source
    TAIR:AT1G01150
    Locus tag
    AT1G01150
    See related
    Araport:AT1G01150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6F3.30
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (69911..72138, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene CBL-interacting Serine/Threonine-kinase Neighboring gene CBL-interacting protein kinase 9 Neighboring gene ncRNA Neighboring gene GRF1-interacting factor 2 Neighboring gene ozone-responsive stress-like protein (DUF1138) Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001331251.1
    NM_001331252.1
    NM_099997.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein
    NP_171623.1
    • Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: TRF-like 10 (TAIR:AT5G03780.1); Has 94 Blast hits to 77 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      69911..72138 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_099997.3 → NP_171623.1  Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171623.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654E5Q4, F4HQJ2
      Conserved Domains (2) summary
      cd11660
      Location:237 → 290
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
      cl22851
      Location:94 → 129
      PHD_SF; PHD finger superfamily

    2. NM_001331251.1 → NP_001322664.1  Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AUM7, A0A654E5Q4

    3. NM_001331252.1 → NP_001322663.1  Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AUQ9, A0A5S9S094
    Nucleotide Protein
    Heading Accession and Version

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