U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    ydiF putative acetate-CoA transferase YdiF [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946211, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ydiF
    Official Full Name
    putative acetate-CoA transferase YdiF
    Primary source
    ECOCYC:EG12432
    Locus tag
    b1694
    See related
    ASAP:ABE-0005656
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1692
    Summary
    Family I CoA transferase. [More information is available at EcoGene: EG12432]. Based on sequence similarity, YdiF is predicted to be an acetate CoA-transferase . [More information is available at EcoCyc: EG12432].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (1775587..1777182)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene quinate/shikimate dehydrogenase Neighboring gene 3-dehydroquinate dehydratase Neighboring gene putative acyl-CoA dehydrogenase YdiO Neighboring gene putative DNA-binding transcriptional regulator YdiP

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Crystallographic trapping of the glutamyl-CoA thioester intermediate of family I CoA transferases. Rangarajan ES, et al. J Biol Chem, 2005 Dec 30. PMID 16253988
    2. The overexpression and complete amino acid sequence of Escherichia coli 3-dehydroquinase. Duncan K, et al. Biochem J, 1986 Sep 1. PMID 3541912, Free PMC Article
    3. An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Reed JL, et al. Genome Biol, 2003. PMID 12952533, Free PMC Article
    4. Intrinsic and extrinsic approaches for detecting genes in a bacterial genome. Borodovsky M, et al. Nucleic Acids Res, 1994 Nov 11. PMID 7984428, Free PMC Article
    5. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables CoA-transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables acetate CoA-transferase activity IC
    Inferred by Curator
    more info
    		 PubMed 
    enables acetate CoA-transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables acetate CoA-transferase activity ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 
    enables acetate CoA-transferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in ketone body catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein homotetramerization ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in short-chain fatty acid metabolic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    putative acetate-CoA transferase YdiF
    NP_416209.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1775587..1777182
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416209.1 putative acetate-CoA transferase YdiF [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416209.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A775TXC9, A0A8S7EBN3, A0A8S7JRU4, A0AAN3UJ52
      Conserved Domains (1) summary
      COG4670
      Location:11 → 531
      YdiF; Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.