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    tRNA-splicing ligase (DUF239) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841982, updated on 18-Sep-2024

    Summary

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    Official Full Name
    tRNA-splicing ligase (DUF239)
    Primary source
    TAIR:AT1G55360
    Locus tag
    AT1G55360
    See related
    Araport:AT1G55360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7A10.1; F7A10_1
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (20666180..20668817, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene arabinogalactan protein 21 Neighboring gene hypothetical protein (DUF1639) Neighboring gene calpain-type cysteine protease family Neighboring gene uncharacterized protein Neighboring gene NDH-dependent cyclic electron flow 5 Neighboring gene Cysteine/Histidine-rich C1 domain family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_104412.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tRNA-splicing ligase (DUF239)
    NP_175933.1
    • Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT3G13510.1); Has 753 Blast hits to 700 proteins in 28 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 10; Plants - 728; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20666180..20668817 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104412.3 → NP_175933.1  tRNA-splicing ligase (DUF239) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175933.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WQD2, Q8GUK9, Q9C8A7
      Conserved Domains (2) summary
      pfam03080
      Location:193 → 415
      Neprosin
      pfam14365
      Location:57 → 180
      Neprosin_AP; Neprosin activation peptide
    Nucleotide Protein
    Heading Accession and Version

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