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    TAF4B TBP-associated factor 4B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839665, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TAF4B
    Official Full Name
    TBP-associated factor 4B
    Primary source
    TAIR:AT1G27720
    Locus tag
    AT1G27720
    See related
    Araport:AT1G27720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22C5.17; T22C5_17; TAF4; TBP-associated factor 4; TBP-associated factor 4B
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    Genomic context

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    See TAF4B in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Sequence:
    Chromosome: 1; NC_003070.9 (9642486..9647620, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene lipase, putative (DUF620) Neighboring gene glycine-rich protein Neighboring gene Syntaxin/t-SNARE family protein Neighboring gene Glycine-rich protein family Neighboring gene salt tolerance zinc finger Neighboring gene root hair defective 6-like 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Yeast two-hybrid map of Arabidopsis TFIID. Lawit SJ, et al. Plant Mol Biol, 2007 May. PMID 17340043
    2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001332785.1
    NM_102537.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    TBP-associated factor 4B
    NP_174093.3
    • TBP-associated factor 4B (TAF4B); FUNCTIONS IN: transcription initiation factor activity; INVOLVED IN: transcription initiation; LOCATED IN: transcription factor TFIID complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID component TAF4 (InterPro:IPR007900), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: TBP-associated factor 4 (TAIR:AT5G43130.1); Has 801 Blast hits to 726 proteins in 155 species: Archae - 1; Bacteria - 21; Metazoa - 244; Fungi - 130; Plants - 81; Viruses - 2; Other Eukaryotes - 322 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9642486..9647620 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332781.1 → NP_001320205.1  TBP-associated factor 4B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AM38, A0A5S9W6C6

    2. NM_001332780.1 → NP_001320210.1  TBP-associated factor 4B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AM45, A0A5S9W6C6

    3. NM_001332779.1 → NP_001320204.1  TBP-associated factor 4B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AM40, A0A5S9W6C6

    4. NM_001332778.1 → NP_001320203.1  TBP-associated factor 4B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6F1, A0A1P8AM41

    5. NM_001332782.1 → NP_001320208.1  TBP-associated factor 4B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6F1, A0A1P8AM58

    6. NM_001332783.1 → NP_001320209.1  TBP-associated factor 4B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AM40, A0A5S9W6C6

    7. NM_001332784.1 → NP_001320206.1  TBP-associated factor 4B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6F1, A0A1P8AM41

    8. NM_102537.3 → NP_174093.3  TBP-associated factor 4B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174093.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6SJR1, Q9SFY7
      UniProtKB/TrEMBL
      A0A5S9W6C6
      Conserved Domains (2) summary
      pfam05236
      Location:463 → 711
      TAF4; Transcription initiation factor TFIID component TAF4 family
      pfam12174
      Location:89 → 144
      RST; RCD1-SRO-TAF4 (RST) plant domain

    9. NM_001332785.1 → NP_001320207.1  TBP-associated factor 4B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AM49, A0A5S9W6C6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6SJR1.1

    Gene LinkOut

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