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    myb-like HTH transcriptional regulator family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835946, updated on 18-Sep-2024

    Summary

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    Official Full Name
    myb-like HTH transcriptional regulator family protein
    Primary source
    TAIR:AT5G58340
    Locus tag
    AT5G58340
    See related
    Araport:AT5G58340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MCK7.21; MCK7_21
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (23582495..23585148)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Kinase interacting (KIP1-like) family protein Neighboring gene lactate/malate dehydrogenase family protein Neighboring gene with no lysine (K) kinase 4 Neighboring gene ovate family protein 3 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203637.1
    NM_125219.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    myb-like HTH transcriptional regulator family protein
    NP_001190566.1
    • myb-like HTH transcriptional regulator family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 5 (TAIR:AT1G15720.1).
    NP_200642.2
    • myb-like HTH transcriptional regulator family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 5 (TAIR:AT1G15720.1); Has 475 Blast hits to 469 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 54; Fungi - 19; Plants - 384; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23582495..23585148
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203637.1 → NP_001190566.1  myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190566.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YFT8, A0A654GC66, Q5XUY3
      Conserved Domains (1) summary
      cd11660
      Location:398 → 446
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

    2. NM_125219.4 → NP_200642.2  myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200642.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YFT8, A0A654GC66, Q5XUY3
      Conserved Domains (1) summary
      cd11660
      Location:398 → 446
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    Nucleotide Protein
    Heading Accession and Version

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