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    DEG16 Trypsin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835564, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DEG16
    Official Full Name
    Trypsin family protein
    Primary source
    TAIR:AT5G54745
    Locus tag
    AT5G54745
    See related
    Araport:AT5G54745
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    degradation of periplasmic proteins 16
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    Genomic context

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    See DEG16 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (22240256..22241233, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene autophagy 18 F-like protein Neighboring gene seed storage albumin 5 Neighboring gene Transport protein particle (TRAPP) component Neighboring gene Translation initiation factor SUI1 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual specificities of the glyoxysomal/peroxisomal processing protease Deg15 in higher plants. Helm M, et al. Proc Natl Acad Sci U S A, 2007 Jul 3. PMID 17592111, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Trypsin family protein
    NP_680437.1
    • Trypsin family protein; FUNCTIONS IN: catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003); BEST Arabidopsis thaliana protein match is: DegP protease 6 (TAIR:AT1G51150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22240256..22241233 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_148132.1 → NP_680437.1  Trypsin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_680437.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3E8B4
      UniProtKB/TrEMBL
      A0A5S9YE64, A0A654GB06
      Conserved Domains (1) summary
      pfam13365
      Location:72 → 188
      Trypsin_2; Trypsin-like peptidase domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3E8B4.1

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