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    CLPX CLP protease regulatory subunit X [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835416, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CLPX
    Official Full Name
    CLP protease regulatory subunit X
    Primary source
    TAIR:AT5G53350
    Locus tag
    AT5G53350
    See related
    Araport:AT5G53350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CLP protease regulatory subunit X; K19E1.15; K19E1_15
    Summary
    CLP protease regulatory subunit CLPX mRNA, nuclear gene
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    Genomic context

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    See CLPX in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    15
    Sequence:
    Chromosome: 5; NC_003076.8 (21643767..21647774)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ubiquitin-associated/translation elongation factor EF1B protein Neighboring gene Galactosyltransferase family protein Neighboring gene ncRNA Neighboring gene TRAF-like superfamily protein Neighboring gene ncRNA Neighboring gene pectin methylesterase PCR fragment F Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plant mitochondria contain proteolytic and regulatory subunits of the ATP-dependent Clp protease. Halperin T, et al. Plant Mol Biol, 2001 Mar. PMID 11352464
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    NM_124714.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP-dependent protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrial matrix IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CLP protease regulatory subunit X
    NP_568792.1
    • CLP protease regulatory subunit X (CLPX); FUNCTIONS IN: unfolded protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), Clp protease, ATP-binding subunit ClpX (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: ATP-dependent Clp protease (TAIR:AT1G33360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21643767..21647774
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124714.4 → NP_568792.1  CLP protease regulatory subunit X [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568792.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O48566, Q9FK07
      UniProtKB/TrEMBL
      A0A178USB7, A0A5S9YDL8
      Conserved Domains (1) summary
      PRK05342
      Location:156 → 526
      clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FK07.1

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