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    BPM1 BTB-POZ and MATH domain 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832018, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BPM1
    Official Full Name
    BTB-POZ and MATH domain 1
    Primary source
    TAIR:AT5G19000
    Locus tag
    AT5G19000
    See related
    Araport:AT5G19000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATBPM1; BTB-POZ and MATH domain 1; BTB-POZ AND MATH DOMAIN 1; T16G12.40; T16G12_40
    Summary
    Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).
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    Genomic context

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    See BPM1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (6342220..6344993)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ARM repeat superfamily protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene mitogen-activated protein kinase 16 Neighboring gene pseudo Neighboring gene mitochondrial editing factor 18

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The protein turnover of Arabidopsis BPM1 is involved in regulation of flowering time and abiotic stress response. Škiljaica A, et al. Plant Mol Biol, 2020 Mar. PMID 31848919
    2. Deletion of a C-terminal intrinsically disordered region of WRINKLED1 affects its stability and enhances oil accumulation in Arabidopsis. Ma W, et al. Plant J, 2015 Sep. PMID 26305482
    3. Identification of Arabidopsis MYB56 as a novel substrate for CRL3BPM E3 ligases. Chen L, et al. Mol Plant, 2014 Oct 24. PMID 25343985
    4. MATH/BTB CRL3 receptors target the homeodomain-leucine zipper ATHB6 to modulate abscisic acid signaling. Lechner E, et al. Dev Cell, 2011 Dec 13. PMID 22172674
    5. Arabidopsis AtCUL3a and AtCUL3b form complexes with members of the BTB/POZ-MATH protein family. Weber H, et al. Plant Physiol, 2005 Jan. PMID 15618422, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. BPM1 protein turnover is involved in regulation of flowering time and abiotic stress response in Arabidopsis
      Title: The protein turnover of Arabidopsis BPM1 is involved in regulation of flowering time and abiotic stress response.
    2. Data show that CUL3 and BPM proteins assemble in planta with WRI1.
      Title: Arabidopsis BPM proteins function as substrate adaptors to a cullin3-based E3 ligase to affect fatty acid metabolism in plants.
    3. BPM1-RAP2.4 interaction requires a complete MATH domain and the N-terminal region of RAP2.4.
      Title: Arabidopsis thaliana BTB/ POZ-MATH proteins interact with members of the ERF/AP2 transcription factor family.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001343580.1
    NM_121905.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to salt stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within cellular response to water deprivation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to osmotic stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    BTB-POZ and MATH domain 1
    NP_001190334.1
    • BTB-POZ and MATH domain 1 (BPM1); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), BTB/POZ (InterPro:IPR013069), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 2 (TAIR:AT3G06190.1).
    NP_197401.2
    • BTB-POZ and MATH domain 1 (BPM1); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 2 (TAIR:AT3G06190.1); Has 5705 Blast hits to 5596 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 3900; Fungi - 59; Plants - 1504; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6342220..6344993
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203405.1 → NP_001190334.1  BTB-POZ and MATH domain 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190334.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UFC0, A0A7G2FF12
      Conserved Domains (4) summary
      smart00225
      Location:204 → 345
      BTB; Broad-Complex, Tramtrack and Bric a brac
      cd00121
      Location:34 → 167
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      cd14736
      Location:347 → 410
      SPOP_C_like_plant; BACK-like Domain C-terminal to BTB in plant proteins similar to speckle-type POZ protein (SPOP)
      pfam00651
      Location:193 → 344
      BTB; BTB/POZ domain

    2. NM_121905.3 → NP_197401.2  BTB-POZ and MATH domain 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197401.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L765
      UniProtKB/TrEMBL
      A0A178UHC2, A0A5S9Y5D7, A0A7G2FFM1
      Conserved Domains (3) summary
      cd00121
      Location:34 → 167
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      cd18280
      Location:189 → 309
      BTB_POZ_BPM_plant; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in plant BTB/POZ-MATH (BPM) protein family
      cd14736
      Location:309 → 372
      BACK_AtBPM-like; BACK (BTB and C-terminal Kelch) domain found in plant BTB/POZ-MATH (BPM) protein family

    3. NM_001343580.1 → NP_001330589.1  BTB-POZ and MATH domain 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L765
      UniProtKB/TrEMBL
      A0A178UHC2, A0A5S9Y5D7, A0A7G2FFM1
      Conserved Domains (3) summary
      cd00121
      Location:34 → 167
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      cd18280
      Location:189 → 309
      BTB_POZ_BPM_plant; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in plant BTB/POZ-MATH (BPM) protein family
      cd14736
      Location:309 → 372
      BACK_AtBPM-like; BACK (BTB and C-terminal Kelch) domain found in plant BTB/POZ-MATH (BPM) protein family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L765.1

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