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    SAP domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830123, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SAP domain-containing protein
    Primary source
    TAIR:AT4G39680
    Locus tag
    AT4G39680
    See related
    Araport:AT4G39680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T19P19.70; T19P19_70
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (18414306..18417608, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tRNA-Val Neighboring gene uncharacterized protein Neighboring gene MICOS complex subunit Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene FK506-binding protein 16-2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis ACINUS is O-glycosylated and regulates transcription and alternative splicing of regulators of reproductive transitions. Bi Y, et al. Nat Commun, 2021 Feb 11. PMID 33574257, Free PMC Article
    2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    • At4g39680_Arabidopsis_lyrata_ssp._lyrata_CAN1 (e-PCR)
    • At4g39680_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)
    NM_001085046.1
    NM_120129.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    SAP domain-containing protein
    NP_001078515.1
    • SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034); Has 10985 Blast hits to 6880 proteins in 693 species: Archae - 26; Bacteria - 1256; Metazoa - 3900; Fungi - 1267; Plants - 2321; Viruses - 541; Other Eukaryotes - 1674 (source: NCBI BLink).
    NP_195678.1
    • SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034); Has 10985 Blast hits to 6880 proteins in 693 species: Archae - 26; Bacteria - 1256; Metazoa - 3900; Fungi - 1267; Plants - 2321; Viruses - 541; Other Eukaryotes - 1674 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18414306..18417608 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120129.3 → NP_195678.1  SAP domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195678.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FXJ3, A0A7G2F9H7, O65655
      Conserved Domains (4) summary
      smart00513
      Location:14 → 48
      SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
      PRK10856
      Location:50 → 143
      PRK10856; cytoskeleton protein RodZ
      pfam16294
      Location:600 → 629
      RSB_motif; RNSP1-SAP18 binding (RSB) motif
      cd12432
      Location:456 → 540
      RRM_ACINU; RNA recognition motif (RRM) found in apoptotic chromatin condensation inducer in the nucleus (acinus) and similar proteins

    2. NM_001085046.1 → NP_001078515.1  SAP domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078515.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FXJ3, A0A7G2F9H7, O65655
      Conserved Domains (4) summary
      smart00513
      Location:14 → 48
      SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
      PRK10856
      Location:50 → 143
      PRK10856; cytoskeleton protein RodZ
      pfam16294
      Location:600 → 629
      RSB_motif; RNSP1-SAP18 binding (RSB) motif
      cd12432
      Location:456 → 540
      RRM_ACINU; RNA recognition motif (RRM) found in apoptotic chromatin condensation inducer in the nucleus (acinus) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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