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    ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829319, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ARM repeat superfamily protein
    Primary source
    TAIR:AT4G31890
    Locus tag
    AT4G31890
    See related
    Araport:AT4G31890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11C18.90; F11C18_90
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (15425886..15429225, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene transcriptional regulator Neighboring gene tRNA-Thr Neighboring gene chromatin remodeling factor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001203954.1
    NM_001342120.1
    NM_119340.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ARM repeat superfamily protein
    NP_001190883.1
    • ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G25130.1).
    NP_194917.1
    • ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G25130.1); Has 1876 Blast hits to 1673 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 369; Fungi - 233; Plants - 1143; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15425886..15429225 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203954.1 → NP_001190883.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190883.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V3C9, A0A384KFK9, A0A5S9XY35, A0A654FUQ6, Q9SZ56
      Conserved Domains (3) summary
      PLN03200
      Location:160 → 300
      PLN03200; cellulose synthase-interactive protein; Provisional
      COG5064
      Location:104 → 408
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:187 → 213
      ARM; armadillo repeat [structural motif]

    2. NM_119340.4 → NP_194917.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194917.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V3C9, A0A384KFK9, A0A5S9XY35, A0A654FUQ6, Q9SZ56
      Conserved Domains (3) summary
      PLN03200
      Location:160 → 300
      PLN03200; cellulose synthase-interactive protein; Provisional
      COG5064
      Location:104 → 408
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:187 → 213
      ARM; armadillo repeat [structural motif]

    3. NM_001342120.1 → NP_001329198.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V3C9, A0A384KFK9, A0A5S9XY35, A0A654FUQ6, Q9SZ56
      Conserved Domains (3) summary
      PLN03200
      Location:160 → 300
      PLN03200; cellulose synthase-interactive protein; Provisional
      COG5064
      Location:104 → 408
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:187 → 213
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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