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    PUB39 PLANT U-BOX 39 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823936, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PUB39
    Official Full Name
    PLANT U-BOX 39
    Primary source
    TAIR:AT3G47820
    Locus tag
    AT3G47820
    See related
    Araport:AT3G47820
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    PLANT U-BOX 39
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    Genomic context

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    See PUB39 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (17644198..17646268)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Galactose mutarotase-like superfamily protein Neighboring gene Calcineurin-like metallo-phosphoesterase superfamily protein Neighboring gene ncRNA Neighboring gene DNA glycosylase superfamily protein Neighboring gene succinate dehydrogenase subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_114650.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PLANT U-BOX 39
    NP_190366.2
    • PLANT U-BOX 39 (PUB39); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein with ARM repeat domain (TAIR:AT5G62560.1); Has 3891 Blast hits to 2631 proteins in 222 species: Archae - 0; Bacteria - 8; Metazoa - 512; Fungi - 485; Plants - 2520; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      17644198..17646268
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114650.3 → NP_190366.2  PLANT U-BOX 39 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RWZ2, Q9STT1
      UniProtKB/TrEMBL
      A0A178V8W3, A0A5S9XIR9, A0A7G2EW07
      Conserved Domains (4) summary
      smart00504
      Location:35 → 98
      Ubox; Modified RING finger domain
      PLN03200
      Location:290 → 359
      PLN03200; cellulose synthase-interactive protein; Provisional
      COG5064
      Location:203 → 344
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:281 → 316
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9STT1.2

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