SCL30A SC35-like splicing factor 30A [Arabidopsis thaliana (thale cress)] - Gene

Summary

Official Symbol: SCL30A
Official Full Name: SC35-like splicing factor 30A
Primary source: TAIR:AT3G13570
Locus tag: AT3G13570
See related: Araport:AT3G13570
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: At-SCL30A; SC35-like splicing factor 30A
Summary: encodes an SC35-like splicing factor of 30 kD that is localized to the nuclear specks. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.
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Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Go to nucleotide: Graphics FASTA GenBank

The SCL30a SR protein regulates ABA-dependent seed traits and germination under stress.
Title: The SCL30a SR protein regulates ABA-dependent seed traits and germination under stress.

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

NM_112203.4

Function	Evidence Code	Pubs
enables mRNA binding	HDA more info	PubMed
enables mRNA binding	IDA Inferred from Direct Assay more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within RNA splicing	NAS Non-traceable Author Statement more info	PubMed
acts_upstream_of_or_within mRNA splicing, via spliceosome	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within mRNA splicing, via spliceosome	TAS Traceable Author Statement more info	PubMed

Component	Evidence Code	Pubs
located_in cytosol	HDA more info	PubMed
located_in nuclear speck	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

NP_187966.1

SC35-like splicing factor 30A (SCL30A); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 33 (TAIR:AT1G55310.3); Has 39411 Blast hits to 22154 proteins in 1003 species: Archae - 84; Bacteria - 1991; Metazoa - 19033; Fungi - 3968; Plants - 4828; Viruses - 731; Other Eukaryotes - 8776 (source: NCBI BLink).

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The following sections contain reference sequences that belong to a specific genome build. Explain