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    Rhodanese/Cell cycle control phosphatase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820041, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Rhodanese/Cell cycle control phosphatase superfamily protein
    Primary source
    TAIR:AT3G08920
    Locus tag
    AT3G08920
    See related
    Araport:AT3G08920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (2712236..2713325)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene reversibly glycosylated polypeptide 3 Neighboring gene ncRNA Neighboring gene DNAJ heat shock family protein Neighboring gene LMBR1-like membrane protein Neighboring gene light harvesting complex photosystem II Neighboring gene ARM repeat superfamily protein Neighboring gene ARM repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chloroplast RNA-Binding Protein RBD1 Promotes Chilling Tolerance through 23S rRNA Processing in Arabidopsis. Wang S, et al. PLoS Genet, 2016 May. PMID 27138552, Free PMC Article
    2. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_111726.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    acts_upstream_of_or_within response to cold IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast thylakoid HDA PubMed 

    General protein information

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    Preferred Names
    Rhodanese/Cell cycle control phosphatase superfamily protein
    NP_566337.1
    • Rhodanese/Cell cycle control phosphatase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G42220.1); Has 237 Blast hits to 237 proteins in 53 species: Archae - 0; Bacteria - 52; Metazoa - 3; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2712236..2713325
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111726.5 → NP_566337.1  Rhodanese/Cell cycle control phosphatase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566337.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LBR6, Q8RY72, Q9SR92
      UniProtKB/TrEMBL
      A0A654F5B4
      Conserved Domains (1) summary
      cd00158
      Location:52 → 171
      RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SR92.1

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