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    VHA-E2 vacuolar H+-ATPase subunit E isoform 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820003, updated on 18-Sep-2024

    Summary

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    Official Symbol
    VHA-E2
    Official Full Name
    vacuolar H+-ATPase subunit E isoform 2
    Primary source
    TAIR:AT3G08560
    Locus tag
    AT3G08560
    See related
    Araport:AT3G08560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    vacuolar H+-ATPase subunit E isoform 2
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    Genomic context

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    See VHA-E2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (2600091..2601907)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Clathrin, heavy chain Neighboring gene elongation defective 1 protein / ELD1 protein Neighboring gene Phototropic-responsive NPH3 family protein Neighboring gene ADP/ATP carrier 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcript level regulation of the vacuolar H(+)-ATPase subunit isoforms VHA-a, VHA-E and VHA-G in Arabidopsis thaliana. Hanitzsch M, et al. Mol Membr Biol, 2007 Sep-Dec. PMID 17710654
    2. Functional analysis of Arabidopsis V-ATPase subunit VHA-E isoforms. Dettmer J, et al. Eur J Cell Biol, 2010 Feb-Mar. PMID 19945769
    3. Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. Shimaoka T, et al. Plant Cell Physiol, 2004 Jun. PMID 15215502
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_111690.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of proton-transporting two-sector ATPase complex, catalytic domain IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    vacuolar H+-ATPase subunit E isoform 2
    NP_187468.1
    • vacuolar H+-ATPase subunit E isoform 2 (VHA-E2); FUNCTIONS IN: hydrogen-exporting ATPase activity, phosphorylative mechanism, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuole, mitochondrial proton-transporting ATP synthase complex; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, vegetative cell; EXPRESSED DURING: pollen developmental stages, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, V1/A1 complex, subunit E (InterPro:IPR002842); BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit E1 (TAIR:AT4G11150.1); Has 759 Blast hits to 757 proteins in 292 species: Archae - 68; Bacteria - 19; Metazoa - 249; Fungi - 151; Plants - 127; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2600091..2601907
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111690.2 → NP_187468.1  vacuolar H+-ATPase subunit E isoform 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187468.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C9Z8
      UniProtKB/TrEMBL
      A0A178VP35, A0A5S9XA70, A0A654F574
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C9Z8.1

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