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    N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817277, updated on 18-Sep-2024

    Summary

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    Official Full Name
    N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein
    Primary source
    TAIR:AT2G27340
    Locus tag
    AT2G27340
    See related
    Araport:AT2G27340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12K2.8
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    11
    Sequence:
    Chromosome: 2; NC_003071.7 (11696595..11699224)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene egg cell-secreted-like protein (DUF1278) Neighboring gene NEP-interacting protein, putative (DUF239) Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene OTU-like cysteine protease family protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036354.2
    NM_001084500.2
    NM_001336113.1
    NM_128293.4
    NM_201814.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables N-acetylglucosaminylphosphatidylinositol deacetylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in GPI anchor biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein
    NP_001031431.1
    • N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: N-acetylglucosaminyl phosphatidylinositol deacetylase (InterPro:IPR003737); BEST Arabidopsis thaliana protein match is: N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein (TAIR:AT3G58130.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001077969.1
    • N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: N-acetylglucosaminyl phosphatidylinositol deacetylase (InterPro:IPR003737); BEST Arabidopsis thaliana protein match is: N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein (TAIR:AT3G58130.2); Has 538 Blast hits to 534 proteins in 245 species: Archae - 0; Bacteria - 137; Metazoa - 107; Fungi - 162; Plants - 52; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
    NP_565647.3
    • N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein; CONTAINS InterPro DOMAIN/s: N-acetylglucosaminyl phosphatidylinositol deacetylase (InterPro:IPR003737); BEST Arabidopsis thaliana protein match is: N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein (TAIR:AT3G58130.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973543.1
    • N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: N-acetylglucosaminyl phosphatidylinositol deacetylase (InterPro:IPR003737); BEST Arabidopsis thaliana protein match is: N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein (TAIR:AT3G58130.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11696595..11699224
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_201814.3 → NP_973543.1  N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973543.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1V6, Q6NLZ3
      Conserved Domains (1) summary
      pfam02585
      Location:42 → 162
      PIG-L; GlcNAc-PI de-N-acetylase

    2. NM_001084500.2 → NP_001077969.1  N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077969.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1V6, Q6NLZ3
      Conserved Domains (1) summary
      pfam02585
      Location:42 → 162
      PIG-L; GlcNAc-PI de-N-acetylase

    3. NM_001036354.2 → NP_001031431.1  N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031431.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1V6, Q6NLZ3
      Conserved Domains (1) summary
      pfam02585
      Location:42 → 162
      PIG-L; GlcNAc-PI de-N-acetylase

    4. NM_001336113.1 → NP_001323821.1  N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AY92, A0A654EXU2

    5. NM_128293.4 → NP_565647.3  N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IFS4, Q0WWG5
    Nucleotide Protein
    Heading Accession and Version

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