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    1700123J17Rik RIKEN cDNA 1700123J17 gene [ Mus musculus (house mouse) ]

    Gene ID: 76728, updated on 17-Aug-2024

    Summary

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    Official Symbol
    1700123J17Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700123J17 geneprovided by MGI
    Primary source
    MGI:MGI:1923978
    See related
    Ensembl:ENSMUSG00000108676 AllianceGenome:MGI:1923978
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm44875
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See 1700123J17Rik in Genome Data Viewer
    Location:
    7; 7 F3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (125823419..125847410, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (126224247..126248238, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene exportin 6 Neighboring gene LAG1 homolog, ceramide synthase 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_20131 Neighboring gene STARR-seq mESC enhancer starr_20132 Neighboring gene STARR-seq mESC enhancer starr_20133 Neighboring gene STARR-seq mESC enhancer starr_20134 Neighboring gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 pseudogene Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:133373927-133374110 Neighboring gene STARR-seq mESC enhancer starr_20135 Neighboring gene STARR-seq mESC enhancer starr_20136 Neighboring gene SH3-binding kinase 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:133415262-133415415 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:133428849-133429094 Neighboring gene ribosomal protein L21 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_131046.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AK043947
      Related
      ENSMUST00000206035.2

    2. NR_131047.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate exon in the 5' region, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AK007252, AK043947

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      125823419..125847410 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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