chst13.S carbohydrate (chondroitin 4) sulfotransferase 13 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: chst13.S
Official Full Name: carbohydrate (chondroitin 4) sulfotransferase 13 S homeolog
Primary source: Xenbase:XB-GENE-945726
Locus tag: XELAEV_18025885mg
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: c4st3; chst13
Annotation information: Annotation category: partial on reference assembly
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Genomic context

Location:: chromosome: 4S

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	4S	NC_054378.1 (112366693..112391734, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	4S	NC_030731.1 (105913516..105938533, complement)

Chromosome 4S - NC_054378.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables sulfotransferase activity	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within carbohydrate biosynthetic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within proteoglycan biosynthetic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info
located_in Golgi membrane	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: carbohydrate (chondroitin 4) sulfotransferase 13 S homeolog

NP_001089213.1

EC 2.8.2.5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001095744.1 → NP_001089213.1 carbohydrate (chondroitin 4) sulfotransferase 13 S homeolog precursor

See identical proteins and their annotated locations for NP_001089213.1

Status: PROVISIONAL

Source sequence(s)

BC089137

UniProtKB/TrEMBL

A0A974D2S4, Q5HZ85

Conserved Domains (1) summary

pfam03567
Location:92 → 322

Sulfotransfer_2; Sulfotransferase family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

112366693..112391734 complement

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GenBank, FASTA, Sequence Viewer (Graphics)