U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Dmrtc1c1 DMRT-like family C1c1 [ Mus musculus (house mouse) ]

    Gene ID: 71083, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Dmrtc1c1provided by MGI
    Official Full Name
    DMRT-like family C1c1provided by MGI
    Primary source
    MGI:MGI:1918333
    See related
    Ensembl:ENSMUSG00000067562 AllianceGenome:MGI:1918333
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Dmrt8.3; Dmrtc1c; 4933424F23Rik
    Summary
    Predicted to be active in nucleus. Is expressed in reproductive system. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 1.7) and placenta adult (RPKM 1.4) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Dmrtc1c1 in Genome Data Viewer
    Location:
    X D; X 45.73 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (101841486..101853556)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (102797880..102809950)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene ornithine decarboxylase, structural 1 pseudogene Neighboring gene predicted pseudogene 9119 Neighboring gene STARR-seq mESC enhancer starr_47678 Neighboring gene DMRT-like family pseudogene Neighboring gene DMRT-like family C1b pseudogene Neighboring gene DMRT-like family pseudogene

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Male-biased expression of X-chromosomal DM domain-less Dmrt8 genes in the mouse. Veith AM, et al. Genomics, 2006 Aug. PMID 16488114
    2. Genomewide discovery and classification of candidate ovarian fertility genes in the mouse. Gallardo TD, et al. Genetics, 2007 Sep. PMID 17660561, Free PMC Article
    3. Identification of novel markers of mouse fetal ovary development. Chen H, et al. PLoS One, 2012. PMID 22844512, Free PMC Article
    4. Placental PPARγ regulates spatiotemporally diverse genes and a unique metabolic network. Shalom-Barak T, et al. Dev Biol, 2012 Dec 1. PMID 22967998, Free PMC Article
    5. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Transcripts highly enriched in ovary; gene identified as candidate female fertility factor.
      Title: Genomewide discovery and classification of candidate ovarian fertility genes in the mouse.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC151188, MGC151190

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    NOT enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    NOT enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    DMRT-like family C1c

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001142691.2 → NP_001136163.1  DMRT-like family C1c isoform 1

      See identical proteins and their annotated locations for NP_001136163.1

      Status: VALIDATED

      Source sequence(s)
      AK016891, AL773565
      Consensus CDS
      CCDS53158.1
      UniProtKB/TrEMBL
      Q9D410
      Related
      ENSMUSP00000113737.2, ENSMUST00000118218.8
      Conserved Domains (1) summary
      pfam15791
      Location:164 → 231
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

    2. NM_001359628.1 → NP_001346557.1  DMRT-like family C1c isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL773565
      UniProtKB/TrEMBL
      Q14AJ8
      Conserved Domains (1) summary
      pfam15791
      Location:158 → 226
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      101841486..101853556
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006528292.3 → XP_006528355.1  DMRT-like family C1c isoform X3

      See identical proteins and their annotated locations for XP_006528355.1

      UniProtKB/TrEMBL
      Q14AJ8
      Conserved Domains (1) summary
      pfam15791
      Location:158 → 226
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

    2. XM_006528293.3 → XP_006528356.1  DMRT-like family C1c isoform X3

      See identical proteins and their annotated locations for XP_006528356.1

      UniProtKB/TrEMBL
      Q14AJ8
      Conserved Domains (1) summary
      pfam15791
      Location:158 → 226
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

    3. XM_006528290.4 → XP_006528353.1  DMRT-like family C1c isoform X3

      See identical proteins and their annotated locations for XP_006528353.1

      UniProtKB/TrEMBL
      Q14AJ8
      Conserved Domains (1) summary
      pfam15791
      Location:158 → 226
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

    4. XM_006528287.4 → XP_006528350.1  DMRT-like family C1c isoform X2

      See identical proteins and their annotated locations for XP_006528350.1

      Conserved Domains (1) summary
      pfam15791
      Location:166 → 234
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

    5. XM_006528288.4 → XP_006528351.1  DMRT-like family C1c isoform X3

      See identical proteins and their annotated locations for XP_006528351.1

      UniProtKB/TrEMBL
      Q14AJ8
      Conserved Domains (1) summary
      pfam15791
      Location:158 → 226
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

    6. XM_006528291.3 → XP_006528354.1  DMRT-like family C1c isoform X3

      See identical proteins and their annotated locations for XP_006528354.1

      UniProtKB/TrEMBL
      Q14AJ8
      Conserved Domains (1) summary
      pfam15791
      Location:158 → 226
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

    7. XM_006528285.3 → XP_006528348.1  DMRT-like family C1c isoform X1

      See identical proteins and their annotated locations for XP_006528348.1

      Conserved Domains (2) summary
      PHA03247
      Location:93 → 227
      PHA03247; large tegument protein UL36; Provisional
      pfam15791
      Location:179 → 247
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials