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    Dmrtc1c2 DMRT-like family C1c2 [ Mus musculus (house mouse) ]

    Gene ID: 668357, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Dmrtc1c2provided by MGI
    Official Full Name
    DMRT-like family C1c2provided by MGI
    Primary source
    MGI:MGI:3802967
    See related
    Ensembl:ENSMUSG00000067561 AllianceGenome:MGI:3802967
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in reproductive system. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 1.7) and placenta adult (RPKM 1.4) See more
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    Genomic context

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    See Dmrtc1c2 in Genome Data Viewer
    Location:
    X D; X 45.76 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (101891237..101900813, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (102847631..102857207, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene DMRT-like family C1b pseudogene Neighboring gene DMRT-like family pseudogene Neighboring gene RIKEN cDNA 1700031F05 gene Neighboring gene predicted pseudogene 9133

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Transcriptome analysis of mouse stem cells and early embryos. Sharov AA, et al. PLoS Biol, 2003 Dec. PMID 14691545, Free PMC Article
    2. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC151188, MGC151190

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    DMRT-like family C1c2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001142690.2 → NP_001136162.1  DMRT-like family C1c2 isoform 1

      See identical proteins and their annotated locations for NP_001136162.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).
      Source sequence(s)
      AL773565
      Consensus CDS
      CCDS53159.1
      UniProtKB/TrEMBL
      Q9D410
      Related
      ENSMUSP00000113033.2, ENSMUST00000120314.8
      Conserved Domains (1) summary
      pfam15791
      Location:164 → 231
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

    2. NM_001310684.1 → NP_001297613.1  DMRT-like family C1c2 isoform 2

      See identical proteins and their annotated locations for NP_001297613.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region and initiates translation from a downstream start codon, compared to variant 1. The encoded protein (isoform 2) has a shorter N-terminus, compared to isoform 1.
      Source sequence(s)
      AL773565, AV363673, BC116811, CN703741
      Consensus CDS
      CCDS81161.1
      UniProtKB/TrEMBL
      Q14AJ8
      Related
      ENSMUSP00000085206.5, ENSMUST00000087896.11
      Conserved Domains (1) summary
      pfam15791
      Location:158 → 226
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      101891237..101900813 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006528259.3 → XP_006528322.1  DMRT-like family C1c2 isoform X3

      See identical proteins and their annotated locations for XP_006528322.1

      UniProtKB/TrEMBL
      Q14AJ8
      Conserved Domains (1) summary
      pfam15791
      Location:158 → 226
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

    2. XM_006528256.4 → XP_006528319.1  DMRT-like family C1c2 isoform X3

      See identical proteins and their annotated locations for XP_006528319.1

      UniProtKB/TrEMBL
      Q14AJ8
      Conserved Domains (1) summary
      pfam15791
      Location:158 → 226
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

    3. XM_006528254.4 → XP_006528317.1  DMRT-like family C1c2 isoform X2

      See identical proteins and their annotated locations for XP_006528317.1

      Conserved Domains (1) summary
      pfam15791
      Location:166 → 234
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

    4. XM_006528255.4 → XP_006528318.1  DMRT-like family C1c2 isoform X3

      See identical proteins and their annotated locations for XP_006528318.1

      UniProtKB/TrEMBL
      Q14AJ8
      Conserved Domains (1) summary
      pfam15791
      Location:158 → 226
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

    5. XM_017318607.1 → XP_017174096.1  DMRT-like family C1c2 isoform X3

      UniProtKB/TrEMBL
      Q14AJ8
      Conserved Domains (1) summary
      pfam15791
      Location:158 → 226
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

    6. XM_011247665.2 → XP_011245967.1  DMRT-like family C1c2 isoform X1

      See identical proteins and their annotated locations for XP_011245967.1

      Conserved Domains (2) summary
      PHA03247
      Location:93 → 227
      PHA03247; large tegument protein UL36; Provisional
      pfam15791
      Location:179 → 247
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2
    Nucleotide Protein Strain
    Heading Accession and Version

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