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    EFL1P1 elongation factor like GTPase 1 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 648809, updated on 17-Sep-2024

    Summary

    Official Symbol
    EFL1P1provided by HGNC
    Official Full Name
    elongation factor like GTPase 1 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:31739
    See related
    AllianceGenome:HGNC:31739
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FAM42B; EFTUD1P1; HsT19321
    Expression
    Ubiquitous expression in testis (RPKM 1.8), small intestine (RPKM 1.2) and 25 other tissues See more
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    Genomic context

    See EFL1P1 in Genome Data Viewer
    Location:
    15q25.2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (84080187..84126601)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (81946140..81992540)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (84748939..84795353)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ADAMTS like 3 Neighboring gene uncharacterized LOC105370935 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6764 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9979 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9980 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_41714 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_41724 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr15:84710870-84712069 Neighboring gene stabilizer of axonemal microtubules 2 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6765 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:84821487-84821987 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:84824261-84824867 Neighboring gene uncharacterized LOC124903544 Neighboring gene UBE2Q2 pseudogene 16 Neighboring gene dynamin 1 pseudogene 41

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Other Names

    • elongation factor Tu GTP binding domain containing 1 pseudogene 1
    • elongation factor Tu GTP-binding domain-containing protein 1 pseudogene
    • family with sequence similarity 42, member B

    Clone Names

    • FLJ13119

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_036652.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC103965, DB064528, DY655563

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      84080187..84126601
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_025791797.1 Reference GRCh38.p14 PATCHES

      Range
      685981..732369
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      81946140..81992540
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)